Package: MSnbase

Version: 1.0.7

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch MSnbase_1.0.7.tar.gz

StartedAt: 2011-10-14 15:43:51 -0700 (Fri, 14 Oct 2011)

EndedAt: 2011-10-14 15:47:18 -0700 (Fri, 14 Oct 2011)

EllapsedTime: 207.1 seconds

RetCode: 0

Status:  OK

CheckDir: MSnbase.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/MSnbase.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSnbase/DESCRIPTION' ... OK
* this is package 'MSnbase' version '1.0.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MSnbase' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'MSnbase' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MSnbase"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MSnbase)

name	user	system	elapsed
MSnExp-class	1.50	0.05	1.61
MSnProcess-class	0	0	0
MSnSet-class	5.11	0.00	5.10
NAnnotatedDataFrame-class	0.02	0.00	0.02
ReporterIons-class	0.01	0.00	0.01
TMT6	0.02	0.00	0.02
clean-methods	7.17	0.01	7.20
extractPrecSpectra-methods	1.33	0.02	1.34
extractSpectra-methods	1.14	0.02	1.16
formatRt	0	0	0
iTRAQ4	0.01	0.00	0.02
pSet-class	0.02	0.00	0.01
plot-methods	10.89	0.01	10.91
plot2d-methods	3.56	0.02	3.61
quantify-methods	5.27	0.00	5.26
readIspyData	0	0	0
readMzXMLData	1.29	0.00	1.30
removePeaks-methods	7.58	0.01	7.59
trimMz-methods	1.35	0.02	1.36