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Package 51/444HostnameOS / ArchBUILDCHECKBUILD BIN
biocDatasets 1.7.1
L. Gautier
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/biocDatasets
Last Changed Rev: 51089 / Revision: 53825
Last Changed Date: 2010-11-28 16:18:04 -0800 (Sun, 28 Nov 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  WARNINGS  OK 

Summary

Package: biocDatasets
Version: 1.7.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch biocDatasets_1.7.1.tar.gz
StartedAt: 2011-03-17 17:29:27 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 17:31:27 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 119.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: biocDatasets.Rcheck
Warnings: 1

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/biocDatasets.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biocDatasets/DESCRIPTION’ ... OK
* this is package ‘biocDatasets’ version ‘1.7.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘biocDatasets’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object '/Users/biocbuild/bbs-2.8-bioc/meat/biocDatasets.Rcheck/00_pkg_src/biocDatasets/man/msubseq.Rd':
  ‘[IRanges:Sequence-class]{Sequence}’

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: lattice
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted ‘synthetic_arrays.pdf’ from 587Kb to 162Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.8-bioc/meat/biocDatasets.Rcheck/00check.log’
for details

biocDatasets.Rcheck/00install.out:

* installing *source* package ‘biocDatasets’ ...
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (biocDatasets)

biocDatasets.Rcheck/biocDatasets-Ex.timings:

nameusersystemelapsed
createProbeCoords0.3320.0200.359
expression_arraywide0.3560.0180.378
msubseq0.2150.0010.216
randomDNASequences0.0030.0000.003
randomIRanges0.1370.0030.140
tilingProbes0.0550.0000.055