Package: cellHTS

Version: 1.22.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS_1.22.0.tar.gz

StartedAt: 2011-10-20 14:03:46 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:05:46 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 119.9 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/cellHTS.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data     1.4Mb
    doc      4.9Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'cellhts.pdf' from 3348Kb to 714Kb
     compacted 'twoChannels.pdf' from 497Kb to 230Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.810	0.011	0.823
ROC	0.014	0.001	0.016
annotate	0.001	0.001	0.000
bdgpbiomart	0.372	0.008	0.388
configure	0.000	0.000	0.001
data-KcViab	0.300	0.008	0.316
data-KcViabSmall	0.013	0.001	0.013
getEnVisionRawData	0.034	0.003	0.038
getLibraryPlate	0.017	0.001	0.019
getMatrix	0.013	0.001	0.015
imageScreen	0.114	0.005	0.119
normalizeChannels	0.001	0.001	0.000
normalizePlates	0.028	0.002	0.030
oneRowPerId	0.006	0.000	0.007
plotPlateLibrary	1.397	0.010	1.414
plotSpatialEffects	0.846	0.006	0.862
print.cellHTS	0.017	0.001	0.019
readPlateData	0.155	0.009	0.169
screenMatch	0.358	0.013	0.372
summarizeChannels	0.001	0.001	0.000
summarizeReplicates	0.074	0.002	0.076
write.tabdel	0.038	0.002	0.041
writeReport	0.014	0.001	0.019
writeTab	0.022	0.002	0.024