Package: globaltest

Version: 5.5.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch globaltest_5.5.2.tar.gz

StartedAt: 2011-03-17 16:30:37 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:32:48 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 130.7 seconds

RetCode: 0

Status:  OK

CheckDir: globaltest.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/globaltest.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.5.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (globaltest)

name	user	system	elapsed
comparative	3.558	0.007	3.564
diagnostics	0.808	0.002	0.811
genesettesting	0	0	0
gt	0.583	0.009	0.592
gt.object-class	0.402	0.017	0.420
gtoptions	0.000	0.000	0.001
mlogit	0.017	0.001	0.019
multtest	0.523	0.003	0.526
v4_checkerboard	0.082	0.003	0.084
v4_geneplot	0.481	0.003	0.484
v4_globaltest	4.118	0.100	4.218
v4_multtest	0.500	0.005	0.505
v4_permutations	1.994	0.066	2.060
v4_regressionplot	1.369	0.034	1.404
v4_sampleplot	0.496	0.003	0.499
v4_sampling	31.156	0.149	31.305