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Package 216/444HostnameOS / ArchBUILDCHECKBUILD BIN
iFlow 2.3.4
Kyongryun Lee
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/iFlow
Last Changed Rev: 53811 / Revision: 53825
Last Changed Date: 2011-03-16 19:13:34 -0700 (Wed, 16 Mar 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ WARNINGS ] OK 

Summary

Package: iFlow
Version: 2.3.4
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch iFlow_2.3.4.tar.gz
StartedAt: 2011-03-17 16:37:57 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:39:39 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 101.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: iFlow.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/iFlow.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'iFlow/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iFlow' version '2.3.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iFlow' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.9Mb
  sub-directories of 1Mb or more:
    doc  11.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ask.dialog: no visible binding for global variable 'selected.channels'
ask.graphics.details: no visible binding for global variable
  'selected.channels'
openGraphics: no visible binding for global variable 'value.y'
openGraphics: no visible binding for global variable 'value.x'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: 'method' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/iFlow.Rcheck/00check.log'
for details

iFlow.Rcheck/00install.out:

* installing *source* package 'iFlow' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: fda
Loading required package: splines
Loading required package: zoo
Loading required package: mvoutlier
Loading required package: cluster
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

* DONE (iFlow)

iFlow.Rcheck/iFlow-Ex.timings:

nameusersystemelapsed
GlobalLists0.0080.0000.008
activeFlowset000
activeNodeID000
activeNodeName000
activeWorkflow0.0000.0010.001
getNewName000
guiEnv0.0010.0000.000
iflow0.8220.1282.022
isAnyActive000
show.message000