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Package 271/444HostnameOS / ArchBUILDCHECKBUILD BIN
mgsa 0.99.0
Sebastian Bauer
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa
Last Changed Rev: 53026 / Revision: 53825
Last Changed Date: 2011-02-21 05:29:33 -0800 (Mon, 21 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK [ OK ]

Summary

Package: mgsa
Version: 0.99.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh mgsa_0.99.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R mgsa.buildbin-libdir
StartedAt: 2011-03-17 18:02:20 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 18:02:33 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 12.4 seconds
RetCode: 0
Status:  OK 
PackageFile: mgsa_0.99.0.tgz
PackageFileSize: 411.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=mgsa.buildbin-libdir mgsa_0.99.0.tar.gz'
>>>>>>> 

* installing *source* package 'mgsa' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for OpenMP flag of C compiler... unknown
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -g -O2  -DPACKAGE_NAME=\"mgsa\" -DPACKAGE_TARNAME=\"mgsa\" -DPACKAGE_VERSION=\"0.99.0\" -DPACKAGE_STRING=\"mgsa\ 0.99.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c mgsa.c -o mgsa.o
mgsa.c: In function 'ts_R_alloc':
mgsa.c:57: warning: ignoring #pragma omp critical
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:1432: warning: ignoring #pragma omp parallel
mgsa.c:1438: warning: ignoring #pragma omp critical
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mgsa.so mgsa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/mgsa.buildbin-libdir/mgsa/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: gtools
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.

Attaching package: 'gdata'

The following object(s) are masked from 'package:stats':

    nobs

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: caTools
Loading required package: bitops
Loading required package: grid

Attaching package: 'gplots'

The following object(s) are masked from 'package:stats':

    lowess

Creating a new generic function for "plot" in "mgsa"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs/i386/mgsa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/i386/mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/i386/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/i386/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "mgsa.buildbin-libdir/mgsa/libs/i386/mgsa.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=mgsa.buildbin-libdir --libs-only mgsa_0.99.0.tar.gz'
>>>>>>> 

* installing *source* package 'mgsa' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for OpenMP flag of C compiler... unknown
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -g -O2  -DPACKAGE_NAME=\"mgsa\" -DPACKAGE_TARNAME=\"mgsa\" -DPACKAGE_VERSION=\"0.99.0\" -DPACKAGE_STRING=\"mgsa\ 0.99.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c mgsa.c -o mgsa.o
mgsa.c: In function 'ts_R_alloc':
mgsa.c:57: warning: ignoring #pragma omp critical
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:1432: warning: ignoring #pragma omp parallel
mgsa.c:1438: warning: ignoring #pragma omp critical
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mgsa.so mgsa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/mgsa.buildbin-libdir/mgsa/libs/ppc

* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs/ppc/mgsa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/ppc/mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/ppc/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/ppc/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "mgsa.buildbin-libdir/mgsa/libs/ppc/mgsa.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=mgsa.buildbin-libdir --libs-only mgsa_0.99.0.tar.gz'
>>>>>>> 

* installing *source* package 'mgsa' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for OpenMP flag of C compiler... unknown
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -g -O2  -DPACKAGE_NAME=\"mgsa\" -DPACKAGE_TARNAME=\"mgsa\" -DPACKAGE_VERSION=\"0.99.0\" -DPACKAGE_STRING=\"mgsa\ 0.99.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c mgsa.c -o mgsa.o
mgsa.c: In function 'ts_R_alloc':
mgsa.c:57: warning: ignoring #pragma omp critical
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:1432: warning: ignoring #pragma omp parallel
mgsa.c:1438: warning: ignoring #pragma omp critical
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mgsa.so mgsa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/mgsa.buildbin-libdir/mgsa/libs/x86_64

* DONE (mgsa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs/x86_64/mgsa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/x86_64/mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/x86_64/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "mgsa.buildbin-libdir/mgsa/libs/x86_64/mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "mgsa.buildbin-libdir/mgsa/libs/x86_64/mgsa.so"