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Package 453/467HostnameOS / ArchBUILDCHECKBUILD BIN
twilight 1.28.0
Stefanie Scheid
Snapshot Date: 2011-10-14 07:21:38 -0700 (Fri, 14 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/twilight
Last Changed Rev: 54808 / Revision: 59225
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: twilight
Version: 1.28.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch twilight_1.28.0.tar.gz
StartedAt: 2011-10-14 17:27:05 -0700 (Fri, 14 Oct 2011)
EndedAt: 2011-10-14 17:27:42 -0700 (Fri, 14 Oct 2011)
EllapsedTime: 37.8 seconds
RetCode: 0
Status:  OK  
CheckDir: twilight.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/twilight.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
twilight: no visible global function definition for 'makeCluster'
twilight: no visible global function definition for 'clusterEvalQ'
twilight: no visible binding for '<<-' assignment to
  '.twilight.lambda.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.pval.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.score.xxx'
twilight: no visible global function definition for 'clusterExport'
twilight: no visible global function definition for 'parCapply'
twilight: no visible binding for global variable '.twilight.lambda.xxx'
twilight: no visible binding for global variable '.twilight.pval.xxx'
twilight: no visible binding for global variable '.twilight.score.xxx'
twilight: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

twilight.Rcheck/00install.out:

* installing *source* package 'twilight' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c confidence.line.c -o confidence.line.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c correlation.c -o correlation.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c kstest.c -o kstest.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c sep.c -o sep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c twosample.perm.c -o twosample.perm.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c twosample.single.c -o twosample.single.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/twilight.Rcheck/twilight/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (twilight)

twilight.Rcheck/twilight-Ex.timings:

nameusersystemelapsed
plot.twilight0.140.020.15
print.twilight0.030.000.04
twilight0.090.000.09
twilight.combi000
twilight.filtering000
twilight.pval0.110.000.11
twilight.teststat0.010.000.02