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Package 224/468HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.7.0
Heidi Dvinge
Snapshot Date: 2011-04-19 07:20:05 -0700 (Tue, 19 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTqPCR
Last Changed Rev: 54802 / Revision: 54934
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 

Summary

Package: HTqPCR
Version: 1.7.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.7.0.tar.gz
StartedAt: 2011-04-19 12:29:52 -0700 (Tue, 19 Apr 2011)
EndedAt: 2011-04-19 12:31:18 -0700 (Tue, 19 Apr 2011)
EllapsedTime: 86.0 seconds
RetCode: 0
Status:  OK 
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/HTqPCR.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-06 r55347)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘HTqPCR.Rnw’ 
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package4.5360.0284.564
cbind0.0480.0000.048
changeCtLayout0.0400.0000.039
clusterCt0.6200.0120.633
filterCategory0.0880.0000.088
filterCtData0.2200.0040.224
heatmapSig1.6520.0041.656
limmaCtData0.9920.0081.001
mannwhitneyCtData1.4440.0041.466
normalizeCtData0.3520.0080.361
plotCVBoxes0.1640.0000.164
plotCtArray0.1320.0000.131
plotCtBoxes0.0560.0000.054
plotCtCard0.0440.0040.050
plotCtCategory3.4360.0323.475
plotCtCor0.0490.0040.055
plotCtDensity0.0320.0040.037
plotCtHeatmap3.1960.0163.214
plotCtHistogram0.0080.0000.010
plotCtOverview0.1080.0000.109
plotCtPCA0.0440.0000.043
plotCtPairs0.6920.0040.694
plotCtRQ0.3560.0040.364
plotCtReps0.1360.0000.137
plotCtScatter0.0240.0000.024
plotCtSignificance0.4080.0120.422
plotCtVariation0.7520.0000.755
plotGenes0.0240.0000.027
qPCRpros0.0040.0000.005
qPCRraw0.0040.0000.005
qPCRset-class0.0280.0000.026
readCtData0.0640.0000.062
setCategory6.6040.0246.759
ttestCtData1.0440.0041.047