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Package 303/472HostnameOS / ArchBUILDCHECKBUILD BIN
Mulcom 1.3.0
Claudio Isella
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Mulcom
Last Changed Rev: 56090 / Revision: 56351
Last Changed Date: 2011-06-09 17:02:42 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: Mulcom
Version: 1.3.0
Command: mkdir Mulcom.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Mulcom_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R Mulcom.buildbin-libdir
StartedAt: 2011-06-22 06:19:36 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 06:19:52 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:  OK 
PackageFile: Mulcom_1.3.0.tgz
PackageFileSize: 1.836 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=Mulcom.buildbin-libdir Mulcom_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Mulcom’ ...
** libs
*** arch - i386
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c mulLibs.cc -o mulLibs.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/i386
*** arch - ppc
g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c mulLibs.cc -o mulLibs.o
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/ppc
*** arch - x86_64
g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c mulLibs.cc -o mulLibs.o
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: spam
Package 'spam' is loaded. Spam version 0.23-0 (2010-09-01).
Type demo( spam) for some demos, help( Spam) for an overview
of this package.
Help for individual functions is optained by adding the
suffix '.spam' to the function name, e.g. 'help(chol.spam)'.

Attaching package: ‘spam’

The following object(s) are masked from ‘package:base’:

    backsolve, forwardsolve, norm

 Use help(fields) for an overview of this library

library( fields, keep.source=TRUE) retains comments in the source code. 

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘MulcomVignette.Rnw’ 
** testing if installed package can be loaded

* DONE (Mulcom)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs/i386/Mulcom.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/i386/Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/i386/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/i386/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/i386/Mulcom.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs/ppc/Mulcom.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/ppc/Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/ppc/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/ppc/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/ppc/Mulcom.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs/x86_64/Mulcom.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/x86_64/Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/x86_64/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/x86_64/Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs/x86_64/Mulcom.so"