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Package 340/472HostnameOS / ArchBUILDCHECKBUILD BIN
phenoTest 1.1.1
Evarist Planet
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/phenoTest
Last Changed Rev: 56319 / Revision: 56351
Last Changed Date: 2011-06-20 00:00:34 -0700 (Mon, 20 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386 [ ERROR ] skipped  skipped 

Summary

Package: phenoTest
Version: 1.1.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phenoTest
StartedAt: 2011-06-22 00:44:40 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 00:45:22 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 42.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘phenoTest/DESCRIPTION’ ... OK
* preparing ‘phenoTest’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package ‘phenoTest’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c getEs.c -o getEs.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o phenoTest.so getEs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmpM5GzDv/Rinst554def5c/phenoTest/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  ‘browseVignettes()’. To cite Bioconductor, see
  ‘citation("Biobase")’ and for packages ‘citation("pkgname")’.

Loading required package: AnnotationDbi
Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘phenoTest.Rnw’ 
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : 
  undefined exports: getEsPositions, findCopyNumber, genesInArea
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpM5GzDv/Rinst554def5c/phenoTest’
      -----------------------------------
ERROR: package installation failed