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Package 340/463HostnameOS / ArchBUILDCHECKBUILD BIN
pint 1.5.09
Olli-Pekka Huovilainen
Snapshot Date: 2011-06-02 07:21:07 -0700 (Thu, 02 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pint
Last Changed Rev: 55373 / Revision: 55954
Last Changed Date: 2011-05-09 14:36:21 -0700 (Mon, 09 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: pint
Version: 1.5.09
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pint_1.5.09.tar.gz
StartedAt: 2011-06-02 16:17:16 -0700 (Thu, 02 Jun 2011)
EndedAt: 2011-06-02 16:25:27 -0700 (Thu, 02 Jun 2011)
EllapsedTime: 490.8 seconds
RetCode: 0
Status:  OK 
CheckDir: pint.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/pint.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pint/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pint’ version ‘1.5.09’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘pint’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

pint.Rcheck/00install.out:

* installing *source* package ‘pint’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: lattice

Attaching package: ‘Matrix’

The following object(s) are masked from ‘package:base’:

    det

Loading required package: MASS

dmt Copyright (C) 2008-2011 Leo Lahti and Olli-Pekka Huovilainen.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under FreeBSD, see the licensing terms for details.

Creating a new generic function for "as.data.frame" in "pint"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘depsearch.Rnw’ 
** testing if installed package can be loaded

dmt Copyright (C) 2008-2011 Leo Lahti and Olli-Pekka Huovilainen.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under FreeBSD, see the licensing terms for details.


pint Copyright (C) 2008-2011 Olli-Pekka Huovilainen and Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under the FreeBSD license.
See the licensing terms for details.

* DONE (pint)

pint.Rcheck/pint-Ex.timings:

nameusersystemelapsed
ChromosomeModels-class141.926 0.981145.539
GeneDependencyModel-class38.385 0.19039.375
fit.byname0.3150.0090.327
join.top.regions0.0000.0000.001
order.feature.info0.0010.0000.000
pint.data0.2260.0060.234
plot39.037 0.18739.931
screen158.588 1.104163.436
summarize.region.parameters0.0000.0000.001
window0.4560.0060.464
z.effect0.2480.0040.253