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Package 360/472HostnameOS / ArchBUILDCHECKBUILD BIN
qrqc 1.1.3
Vince Buffalo
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/qrqc
Last Changed Rev: 55809 / Revision: 56351
Last Changed Date: 2011-05-24 13:46:28 -0700 (Tue, 24 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: qrqc
Version: 1.1.3
Command: mkdir qrqc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qrqc_1.1.3.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R qrqc.buildbin-libdir
StartedAt: 2011-06-22 06:23:09 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 06:23:34 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 25.6 seconds
RetCode: 0
Status:  OK 
PackageFile: qrqc_1.1.3.tgz
PackageFileSize: 229.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=qrqc.buildbin-libdir qrqc_1.1.3.tar.gz'
>>>>>>> 

* installing *source* package ‘qrqc’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -L/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/usrlib/i386 -lbam -lbcf -ltabix -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/i386
*** arch - ppc
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk",  : 
  no file found
Calls: cat -> system.file
Execution halted
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk",  : 
  no file found
Calls: cat -> system.file
Execution halted
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/ppc
*** arch - x86_64
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk",  : 
  no file found
Calls: cat -> system.file
Execution halted
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk",  : 
  no file found
Calls: cat -> system.file
Execution halted
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include"   -fPIC  -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x86_64
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: ‘IRanges’

The following object(s) are masked from ‘package:base’:

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘qrqc.Rnw’ 
** testing if installed package can be loaded

* DONE (qrqc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"