Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 76/462HostnameOS / ArchBUILDCHECKBUILD BIN
Category 2.19.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-05-05 07:21:10 -0700 (Thu, 05 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Category
Last Changed Rev: 54802 / Revision: 55269
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Category
Version: 2.19.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Category_2.19.0.tar.gz
StartedAt: 2011-05-05 13:37:34 -0700 (Thu, 05 May 2011)
EndedAt: 2011-05-05 13:41:19 -0700 (Thu, 05 May 2011)
EllapsedTime: 224.4 seconds
RetCode: 0
Status:  OK 
CheckDir: Category.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/Category.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.19.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘Category.pdf’ from 782Kb to 228Kb
     compacted ‘ChromBand.pdf’ from 507Kb to 174Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Category.Rcheck/00install.out:

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘Category.Rnw’ 
   ‘ChromBand.Rnw’ 
** testing if installed package can be loaded

* DONE (Category)

Category.Rcheck/Category-Ex.timings:

nameusersystemelapsed
ChrBandTree-class22.306 0.64328.385
ChrMapHyperGParams-class0.0030.0000.003
ChrMapHyperGResult-class0.0020.0000.003
ChrMapLinearMParams-class0.0020.0010.002
ChrMapLinearMResult-class0.0020.0000.003
DatPkg-class0.1100.0070.195
HyperGResult-accessors1.3160.0941.592
LinearMParams-class0.0020.0000.003
LinearMResult-class0.0020.0010.002
LinearMResultBase-class0.0020.0010.002
MAPAmat16.622 0.68321.927
applyByCategory0.0050.0010.006
cateGOryMatrix0.7760.0761.206
cb_parse_band_Hs0.0000.0000.001
cb_parse_band_Mm0.0010.0010.001
findAMstats0.0020.0000.003
getPathNames0.2270.0160.393
gseattperm6.5840.1898.679
makeChrBandGraph14.744 0.26518.922
makeEBcontr0.5610.0140.583
probes2MAP0.3840.0160.466
probes2Path0.1150.0070.257
ttperm0.0370.0020.039