Package: IdMappingRetrieval

Version: 1.0.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch IdMappingRetrieval_1.0.0.tar.gz

StartedAt: 2012-01-09 03:44:19 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 03:46:46 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 146.8 seconds

RetCode: 0

Status:  OK

CheckDir: IdMappingRetrieval.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/IdMappingRetrieval.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IdMappingRetrieval/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IdMappingRetrieval' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'IdMappingRetrieval' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'IdMappingRetrieval/R/zzz.R':
  .onAttach calls:
    cat("This is ", pkgname, " ", desc$Version, " ", desc$Date, "\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'IdMappingRetrieval' ...
** R
** demo
** inst
** preparing package for lazy loading
This is  rChoiceDialogs   1.0.1   2011-01-14 
This is  ENVISIONQuery   1.2.0   2011-07-17 
Warning in setGenericS3.default(name, envir = envir, validators = validators) :
  Renamed the preexisting function getServices to getServices.default, which was defined in environment ENVISIONQuery.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'IdMappingRetrieval.Rnw' using 'latin-9' 
** testing if installed package can be loaded
This is  rChoiceDialogs   1.0.1   2011-01-14 
This is  ENVISIONQuery   1.2.0   2011-07-17 
This is  IdMappingRetrieval   1.0.0   2011-06-30 

* DONE (IdMappingRetrieval)

name	user	system	elapsed
AnnotationDavid	0	0	0
AnnotationEnsembl	0	0	0
AnnotationEnsemblCsv	0	0	0
AnnotationEnvision	0	0	0
addServices.ServiceManager	0.04	0.00	0.03
createSubmission.AnnotationNetAffx	0	0	0
getArrayType.Annotation	0	0	0
getArrayTypes.Annotation	0	0	0
getCredentials.Annotation	0	0	0
getDataFrame.Annotation	0	0	0
getDataFrameList.ServiceManager	0	0	0
getDefaultServices.ServiceManager	0.01	0.00	0.01
getIdMap.Annotation	0	0	0
getIdMapList.ServiceManager	0	0	0
getProbesetList.AnnotationAffx	0	0	0
getRoot.Annotation	0	0	0
getServiceRoot.Annotation	0	0	0
getServices.ServiceManager	0.02	0.00	0.02
init.Annotation	0	0	0
setCredentials.Annotation	0	0	0
setCredentials.AnnotationAffx	0	0	0
setOptions.Annotation	0	0	0
setServices.ServiceManager	0.01	0.00	0.01
subsetByColumn	0	0	0