Package: KEGGSOAP

Version: 1.27.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch KEGGSOAP_1.27.0.tar.gz

StartedAt: 2011-06-22 03:44:53 -0700 (Wed, 22 Jun 2011)

EndedAt: 2011-06-22 03:46:46 -0700 (Wed, 22 Jun 2011)

EllapsedTime: 113.4 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGSOAP.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/KEGGSOAP.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGSOAP/DESCRIPTION’ ... OK
* this is package ‘KEGGSOAP’ version ‘1.27.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘KEGGSOAP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘KEGGSOAP’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KEGGSOAP)

name	user	system	elapsed
bconv	0.047	0.003	5.323
bget	0.057	0.002	2.828
get.genes.by.motifs	0.064	0.002	2.476
get.genes.by.organism	0.031	0.001	0.837
get.genes.by.pathway	0.100	0.003	3.316
get.ko.by.gene	0.175	0.005	6.847
get.motifs.by.gene	0.038	0.001	1.423
get.paralogs.by.gene	0.079	0.002	1.654
get.pathways.by.genes	0.082	0.003	3.526
getBestNeighbors	0.160	0.003	3.869
list.organisms	2.796	0.044	7.034
mark.pathway.by.objects	0.047	0.002	5.818
search.compounds.by.name	0.185	0.004	6.918
search.glycans.by.name	0.204	0.004	6.502