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Package 440/472HostnameOS / ArchBUILDCHECKBUILD BIN
SRAdb 1.7.0
Jack Zhu
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SRAdb
Last Changed Rev: 56090 / Revision: 56351
Last Changed Date: 2011-06-09 17:02:42 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: SRAdb
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SRAdb_1.7.0.tar.gz
StartedAt: 2011-06-22 05:38:58 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 05:40:11 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 73.0 seconds
RetCode: 0
Status:  OK 
CheckDir: SRAdb.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/SRAdb.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SRAdb/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SRAdb’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘SRAdb’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

SRAdb.Rcheck/00install.out:

* installing *source* package ‘SRAdb’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: DBI
Loading required package: bitops
Setting options('download.file.method.GEOquery'='curl')
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘SRAdb.Rnw’ 
** testing if installed package can be loaded
Setting options('download.file.method.GEOquery'='curl')

* DONE (SRAdb)

SRAdb.Rcheck/SRAdb-Ex.timings:

nameusersystemelapsed
IGVclear0.0000.0010.000
IGVcollapse000
IGVgenome000
IGVgoto0.0010.0000.001
IGVload000
IGVsession0.0080.0020.010
IGVsnapshot0.0000.0010.001
IGVsocket0.0000.0000.001
IGVsort0.0000.0000.001
SRAdb-package0.0590.0010.062
colDescriptions0.0030.0000.002
entityGraph0.0050.0000.005
getSRA0.0140.0010.014
getSRAdbFile0.0010.0000.000
getSRAfile0.0030.0000.002
getSRAinfo0.0020.0000.003
listSRAfile0.0020.0000.003
sraConvert0.0040.0000.003
sraGraph0.0070.0000.007
startIGV0.0000.0000.001