Package: beadarray

Version: 2.4.1

Command: rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=beadarray.buildbin-libdir beadarray_2.4.1.tar.gz

StartedAt: 2012-01-09 06:16:13 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 06:16:32 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 19.0 seconds

RetCode: 0

Status:  OK

PackageFile: beadarray_2.4.1.zip

PackageFileSize: 5.212 MiB

* installing *source* package 'beadarray' ...
** libs
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c BASH.c -o BASH.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c HULK.c -o HULK.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c determiningGridPositions.c -o determiningGridPositions.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c findAllOutliers.c -o findAllOutliers.o
findAllOutliers.c: In function 'findBeadStatus':
findAllOutliers.c:155:9: warning: 'm' may be used uninitialized in this function
findAllOutliers.c:155:12: warning: 'ma' may be used uninitialized in this function
findAllOutliers.c: In function 'findAllOutliers':
findAllOutliers.c:226:20: warning: 'status' may be used uninitialized in this function
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function 'illuminaBackground':
imageProcessing.c:88:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'medianBackground':
imageProcessing.c:135:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'illuminaSharpen':
imageProcessing.c:238:0: warning: ignoring #pragma omp parallel
imageProcessing.c:245:0: warning: ignoring #pragma omp parallel
gcc -shared -s -static-libgcc -o beadarray.dll tmp.def BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/i386
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'boxplot' from package 'graphics' in package 'beadarray'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ImageProcessing.rnw' 
   'beadarray.rnw' 
   'beadlevel.rnw' 
   'beadsummary.rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'beadarray' as beadarray_2.4.1.zip

* DONE (beadarray)