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Package 159/516HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 2.0.0
Sepp Hochreiter
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/fabia
Last Changed Rev: 60341 / Revision: 61898
Last Changed Date: 2011-11-15 12:46:03 -0800 (Tue, 15 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: fabia
Version: 2.0.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch fabia_2.0.0.tar.gz
StartedAt: 2012-01-09 02:40:08 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 02:41:02 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 53.0 seconds
RetCode: 0
Status:  OK  
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/fabia.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'fabia' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
** libs
  running src/Makefile.win ...
rm -f fabia.o fabia.dll *.a *.o *.so *.dll
x86_64-w64-mingw32-gcc  -c fabiac.c -o fabia.o -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Wall -O3
x86_64-w64-mingw32-gcc  -shared -s -static-libgcc fabia.o -L"D:/biocbld/BBS-2˜1.9-B/R/bin/x64"  -lR  -o fabia.dll 
rm -f fabia.o *.a *.o *.so
installing to D:/biocbld/bbs-2.9-bioc/meat/fabia.Rcheck/fabia/libs/x64
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'fabia'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'fabia.Rnw' 
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.080.000.08
extractBic0.090.000.09
extractPlot0.350.010.36
fabi0.250.000.25
fabia0.090.000.09
fabiaDemo000
fabiaVersion000
fabiap0.110.000.11
fabias0.10.00.1
fabiasp0.570.000.57
makeFabiaData0.140.000.15
makeFabiaDataBlocks0.080.020.09
makeFabiaDataBlocksPos0.090.010.11
makeFabiaDataPos0.100.020.11
matrixImagePlot0.090.010.11
mfsc0.090.000.10
nmfdiv0.130.000.12
nmfeu0.110.000.11
nmfsc0.030.000.03
plot-methods0.650.000.86
plotBicluster0.180.000.17
projFunc000
projFuncPos0.000.020.02
readSamplesSpfabia000
show-methods0.110.000.11
showSelected-methods0.110.000.11
spfabia0.040.020.06
summary-methods0.130.000.13