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Package 243/517HostnameOS / ArchBUILDCHECKBUILD BIN
hexbin 1.28.0
Nicholas Lewin-Koh
Snapshot Date: 2011-11-07 18:22:04 -0800 (Mon, 07 Nov 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/hexbin
Last Changed Rev: 59920 / Revision: 60110
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: hexbin
Version: 1.28.0
Command: rm -rf hexbin.buildbin-libdir && mkdir hexbin.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hexbin.buildbin-libdir hexbin_1.28.0.tar.gz >hexbin-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=hexbin.buildbin-libdir --install="check:hexbin-install.out" --force-multiarch --no-vignettes --timings hexbin_1.28.0.tar.gz && mv hexbin.buildbin-libdir/* hexbin.Rcheck/ && rmdir hexbin.buildbin-libdir
StartedAt: 2011-11-08 02:15:12 -0800 (Tue, 08 Nov 2011)
EndedAt: 2011-11-08 02:16:47 -0800 (Tue, 08 Nov 2011)
EllapsedTime: 94.4 seconds
RetCode: 0
Status:  OK  
CheckDir: hexbin.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/hexbin.Rcheck'
* using R version 2.14.0 (2011-10-31)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for 'coords'
* checking Rd files ... NOTE
prepare_Rd: NHANES.Rd:41-43: Dropping empty section \references
prepare_Rd: hexList.Rd:46-48: Dropping empty section \examples
prepare_Rd: hexVP.abline.Rd:43-45: Dropping empty section \examples
prepare_Rd: hexViewport.Rd:25-27: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:15-16: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:23-24: Dropping empty section \examples
prepare_Rd: panel.hexloess.Rd:28-29: Dropping empty section \details
prepare_Rd: panel.hexloess.Rd:41-42: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'hdiffplot.R'
  Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
<   Buggy version of Kinderman-Ramage generator used
---
>   Buggy version of Kinderman-Ramage generator used.
24,25c24,25
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
<   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
>   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
109,110c109,110
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
  Running 'hray.R'
  Running 'large.R'
  Running 'viewp-ex.R'
 OK
** running tests for arch 'x64'
  Running 'hdiffplot.R'
  Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
<   Buggy version of Kinderman-Ramage generator used
---
>   Buggy version of Kinderman-Ramage generator used.
24,25c24,25
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
<   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
>   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
109,110c109,110
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
  Running 'hray.R'
  Running 'large.R'
  Running 'viewp-ex.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

hexbin.Rcheck/00install.out:


install for i386

* installing *source* package 'hexbin' ...
** libs
gfortran      -O3  -mtune=core2 -c hbin.f -o hbin.o
gfortran      -O3  -mtune=core2 -c hcell.f -o hcell.o
gfortran      -O3  -mtune=core2 -c herode.f -o herode.o
gfortran      -O3  -mtune=core2 -c hsm.f -o hsm.o
gcc -shared -s -static-libgcc -o hexbin.dll tmp.def hbin.o hcell.o herode.o hsm.o -Ld:/RCompile/CRANpkg/extralibs/local/lib -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/hexbin.buildbin-libdir/hexbin/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'hexbin'
Creating a generic function for 'summary' from package 'base' in package 'hexbin'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'hexagon_binning.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'hexbin' ...
** libs
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c hbin.f -o hbin.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c hcell.f -o hcell.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c herode.f -o herode.o
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c hsm.f -o hsm.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o hexbin.dll tmp.def hbin.o hcell.o herode.o hsm.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/hexbin.buildbin-libdir/hexbin/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hexbin' as hexbin_1.28.0.zip

* DONE (hexbin)

hexbin.Rcheck/hexbin-Ex.timings:

nameusersystemelapsed
NHANES0.170.000.17
colramp0.270.000.27
erode.hexbin0.250.000.84
getHMedian0.010.000.02
gplot.hexbin1.190.011.75
grid.hexagons0.430.000.44
grid.hexlegend000
hboxplot0.090.000.09
hcell2xy0.050.000.05
hcell2xyInt0.010.000.01
hdiffplot0.180.000.22
hexGraphPaper0.060.000.06
hexMA.loess1.110.011.93
hexTapply0.140.000.14
hexVP-class0.140.000.14
hexViewport0.060.020.08
hexbin0.190.000.19
hexbinplot1.20.01.2
hexplom2.570.012.82
hexpolygon0.060.000.25
optShape0.030.020.05
panel.hexboxplot0.190.000.19
plotMAhex0.380.000.37
smooth.hexbin0.390.000.41