Package: pcot2

Version: 1.22.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch pcot2_1.22.0.tar.gz

StartedAt: 2012-01-09 04:40:12 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 04:40:53 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 40.7 seconds

RetCode: 1

Status:  ERROR

CheckDir: pcot2.Rcheck

Warnings: NA

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/pcot2.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pcot2/DESCRIPTION' ... OK
* this is package 'pcot2' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'pcot2' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'pcot2-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: corplot
> ### Title: Produce a plot for jointly visualizing pooled correlation
> ###   information and expression data for selected genes
> ### Aliases: corplot
> ### Keywords: hplot iplot
> 
> ### ** Examples
> 
> library(multtest)
> library(hu6800.db)  
Loading required package: AnnotationDbi
Loading required package: org.Hs.eg.db
> data(golub)
> rownames(golub) <- golub.gnames[,3]
> colnames(golub) <- golub.cl
> KEGG.list <- as.list(hu6800PATH)
> imat <- getImat(golub, KEGG.list, ms=10) 
> colnames(imat) <- paste("KEGG", colnames(imat), sep="")
> sel <- c("04620","04120")
> main <- paste("KEGG", sel, sep="")
> for(i in 1:length(sel)){
+ fname <- paste("corplot-KEGG",sel[i] , ".jpg", sep="")
+ jpeg(fname, width=1600, height=1200, quality=100)
+ selgene <- rownames(imat)[imat[,match(paste("KEGG",sel,sep="")[i],colnames(imat))]==1]
+ corplot(golub, selgene, golub.cl, main=main[i])
+ dev.off()
+ }
Warning in jpeg(fname, width = 1600, height = 1200, quality = 100) :
  Unable to allocate bitmap
Warning in jpeg(fname, width = 1600, height = 1200, quality = 100) :
  opening device failed
Error in jpeg(fname, width = 1600, height = 1200, quality = 100) : 
  unable to start jpeg() device
Execution halted

* installing *source* package 'pcot2' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'pcot2.Rnw' 
** testing if installed package can be loaded

* DONE (pcot2)

name	user	system	elapsed
aveProbe	8.34	0.05	9.06