Package: plateCore

Version: 1.12.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch plateCore_1.12.0.tar.gz

StartedAt: 2012-01-09 04:55:53 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 04:58:51 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 178.0 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/plateCore.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                old_size new_size compress
  plateCore.rda    1.8Mb    948Kb       xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import '.__C__character' when loading 'methods'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning message:
replacing previous import '.__C__character' when loading 'methods' 

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	4.09	0.04	4.13
applyControlGates-methods	10.71	0.00	10.71
compensate-methods	4.31	0.02	4.43
compensationSet	0.22	0.00	0.22
densityplot-methods	1.37	0.00	1.38
fixAutoFl-methods	4.60	0.01	4.67
flowPlate-class	2.87	0.00	2.87
flowPlate-method	2.95	0.00	2.96
fpbind-methods	7.19	0.00	7.19
getGroups-methods	1.28	0.00	1.28
gutterPlot-methods	1.17	0.00	1.17
mfiPlot-methods	10.55	0.00	10.55
on-methods	7.97	0.00	8.00
panel.densityplot.flowPlate	1.81	0.02	1.84
panel.xyplot.flowPlate	1.5	0.0	1.5
plateCore-package	2.36	0.00	2.36
plateSet-methods	2.44	0.00	2.44
plotPlate-methods	2.96	0.00	2.97
prepanel.densityplot.flowPlate	1.39	0.00	1.39
prepanel.xyplot.flowPlate	1.21	0.00	1.20
setControlGates-methods	2.56	0.00	2.57
summaryStats-methods	10.55	0.00	10.57
wellAnnotation-methods	1.25	0.00	1.25
xyplot-methods	1.17	0.00	1.18