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Package 393/516HostnameOS / ArchBUILDCHECKBUILD BIN
qtbase 1.0.0
Michael Lawrence
Snapshot Date: 2012-03-02 18:22:01 -0800 (Fri, 02 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/qtbase
Last Changed Rev: 59920 / Revision: 63385
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: qtbase
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-examples --no-multiarch qtbase_1.0.0.tar.gz
StartedAt: 2012-03-03 06:27:54 -0800 (Sat, 03 Mar 2012)
EndedAt: 2012-03-03 06:34:34 -0800 (Sat, 03 Mar 2012)
EllapsedTime: 399.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: qtbase.Rcheck
Warnings: 8

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using options '--no-examples --no-vignettes'
* checking for file 'qtbase/DESCRIPTION' ... OK
* this is package 'qtbase' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'qtbase/src' contains object files.
* checking if there is a namespace ... OK
* checking whether package 'qtbase' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.4Mb
  sub-directories of 1Mb or more:
    libs   14.8Mb
    local  23.5Mb
    qdoc    3.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... NOTE
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
print.RQtClass: no visible binding for global variable 'protected'
qmetadata<- : <anonymous>: no visible binding for global variable
  'this'
qsetProperty : <anonymous>: no visible binding for global variable
  'this'
qsetRefClass : getMethodNames: no visible binding for global variable
  'static'
qsetRefClass : getMethodNames: no visible binding for global variable
  'constructor'
qsetSignal : <anonymous>: no visible binding for global variable 'this'
qsignals: no visible binding for global variable 'type'
qslots: no visible binding for global variable 'type'
qsmokeClass: no visible binding for global variable 'static'
qsmokeClass: no visible binding for global variable 'protected'
* checking Rd files ... NOTE
prepare_Rd: qsetStyleSheet.Rd:37-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'qsetClass'
  '...'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... SKIPPED
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'slots.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 8 warnings, see
  '/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00check.log'
for details

qtbase.Rcheck/00install.out:

* installing *source* package 'qtbase' ...
** libs
** arch - i386
mkdir -p ../kdebindings-build;
cd ../kdebindings-build; \
	cmake ../kdebindings -DCMAKE_INSTALL_PREFIX=../inst/local; \
	LD_LIBRARY_PATH=../../generator/bin make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Checking whether CXX compiler has -isysroot
-- Checking whether CXX compiler has -isysroot - yes
-- Checking whether CXX compiler supports OSX deployment target flag
-- Checking whether CXX compiler supports OSX deployment target flag - yes
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - not found.
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - found
-- Looking for QT_MAC_USE_COCOA
-- Looking for QT_MAC_USE_COCOA - found
-- Found Qt4: /usr/bin/qmake (found suitable version "4.7.0", required is "4.0.0")
-- Could NOT find Qt4 (missing:  QT_QTUITOOLS_INCLUDE_DIR) (found suitable version "4.7.0", required is "4.0.0")
-- Found Perl: /usr/bin/perl 
-- Checking how Qt was built...
-- Threshold is set to 15
-- QT_NO_DEBUG *Undefined*
-- QT_NO_ACCESSIBILITY [Defined]
-- QT_NO_STYLE_PLASTIQUE *Undefined*
-- QT_NO_STYLE_WINDOWSXP [Defined]
-- QT_NO_STYLE_WINDOWS *Undefined*
-- QT_NO_STYLE_MAC [Defined]
-- QT_NO_STYLE_CLEANLOOKS *Undefined*
-- QT_NO_TABLEVIEW *Undefined*
-- QT_OPENGL_LIB [Defined]
-- QT_DECLARATIVE_LIB [Defined]
-- QT_SCRIPT_LIB [Defined]
-- QT_SVG_LIB [Defined]
-- QT_HELP_LIB [Defined]
-- QT_WEBKIT_LIB [Defined]
-- QT_MULTIMEDIA_LIB [Defined]
-- QT_GUI_LIB [Defined]
-- QT_TEST_LIB [Defined]
-- QT_DBUS_LIB [Defined]
-- QT_XML_LIB [Defined]
-- QT_SQL_LIB [Defined]
-- QT_XMLPATTERNS_LIB [Defined]
-- QT_NETWORK_LIB [Defined]
-- QT_CORE_LIB [Defined]
-- Build Smoke... yes - Qt
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build
Scanning dependencies of target cppparser
[  1%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/ast.cpp.o
[  3%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/default_visitor.cpp.o
[  4%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/memorypool.cpp.o
[  6%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/visitor.cpp.o
[  8%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/control.cpp.o
[  9%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/lexer.cpp.o
[ 11%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parser.cpp.o
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:1036:2: warning: #warning "implement me"
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:2604:2: warning: #warning "implemente me (AST)"
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:3490:2: warning: #warning "mark the ast as constant"
[ 13%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/listnode.cpp.o
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[ 18%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parsesession.cpp.o
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp: In destructor 'ParseSession::˜ParseSession()':
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42: warning: possible problem detected in invocation of delete operator:
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42: warning: invalid use of incomplete type 'struct rpp::MacroBlock'
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.h:43: warning: forward declaration of 'struct rpp::MacroBlock'
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42: note: neither the destructor nor the class-specific operator delete will be called, even if they are declared when the class is defined.
[ 19%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentparser.cpp.o
[ 21%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentformatter.cpp.o
[ 22%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/codegenerator.cpp.o
[ 24%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/indexedstring.cpp.o
[ 26%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/stringhelpers.cpp.o
[ 27%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-stream.cpp.o
[ 29%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro-expander.cpp.o
[ 31%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-scanner.cpp.o
[ 32%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro.cpp.o
[ 34%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-engine.cpp.o
[ 36%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-internal.cpp.o
[ 37%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-environment.cpp.o
[ 39%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-location.cpp.o
[ 40%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/preprocessor.cpp.o
[ 42%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/chartools.cpp.o
Linking CXX shared library ../bin/libcppparser.dylib
[ 42%] Built target cppparser
Scanning dependencies of target smokegen
[ 44%] Building CXX object generator/CMakeFiles/smokegen.dir/main.cpp.o
[ 45%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorenvironment.cpp.o
[ 47%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorvisitor.cpp.o
[ 49%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorpreprocessor.cpp.o
[ 50%] Building CXX object generator/CMakeFiles/smokegen.dir/options.cpp.o
[ 52%] Building CXX object generator/CMakeFiles/smokegen.dir/type_compiler.cpp.o
[ 54%] Building CXX object generator/CMakeFiles/smokegen.dir/name_compiler.cpp.o
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/name_compiler.cpp:139:2: warning: #warning "NameCompiler::visitUnqualifiedName() -- implement me"
[ 55%] Building CXX object generator/CMakeFiles/smokegen.dir/type.cpp.o
Linking CXX executable bin/smokegen
[ 55%] Built target smokegen
Scanning dependencies of target generator_smoke
[ 57%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/generator_smoke.cpp.o
[ 59%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeClasses.cpp.o
[ 60%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeSmokeDataFile.cpp.o
[ 62%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/helpers.cpp.o
Linking CXX shared module ../../bin/generator_smoke.so
[ 62%] Built target generator_smoke
Scanning dependencies of target generator_dump
[ 63%] Building CXX object generator/generators/dump/CMakeFiles/generator_dump.dir/generator_dump.cpp.o
Linking CXX shared module ../../bin/generator_dump.so
[ 63%] Built target generator_dump
[ 65%] Generating smokedata.cpp, x_1.cpp, x_2.cpp, x_3.cpp, x_4.cpp, x_5.cpp, x_6.cpp, x_7.cpp, x_8.cpp, x_9.cpp, x_10.cpp, x_11.cpp, x_12.cpp, x_13.cpp, x_14.cpp, x_15.cpp, x_16.cpp, x_17.cpp, x_18.cpp, x_19.cpp, x_20.cpp
using generator "/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build/generator/bin/generator_smoke.so" 
include directory "/Library/Frameworks/QtCore.framework;/Library/Frameworks/QtCore.framework" doesn't exist 
parsing "/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/smoke/qt/qt_includes.h" 
Generating SMOKE sources... 
preparing SMOKE data [qt]
writing out smokedata.cpp [qt]
writing out x_*.cpp [qt]
Done. 
Scanning dependencies of target smokeqt
[ 67%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/smokedata.cpp.o
[ 68%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_1.cpp.o
[ 70%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_2.cpp.o
[ 72%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_3.cpp.o
[ 73%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_4.cpp.o
[ 75%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_5.cpp.o
[ 77%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_6.cpp.o
[ 78%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_7.cpp.o
[ 80%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_8.cpp.o
[ 81%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_9.cpp.o
[ 83%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_10.cpp.o
[ 85%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_11.cpp.o
[ 86%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_12.cpp.o
[ 88%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_13.cpp.o
[ 90%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_14.cpp.o
[ 91%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_15.cpp.o
[ 93%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_16.cpp.o
[ 95%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_17.cpp.o
[ 96%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_18.cpp.o
[ 98%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_19.cpp.o
[100%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_20.cpp.o
Linking CXX static library libsmokeqt.a
[100%] Built target smokeqt
Install the project...
-- Install configuration: ""
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/bin/smokegen
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorenvironment.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generator_export.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorpreprocessor.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorvisitor.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/name_compiler.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/options.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type_compiler.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libcppparser.dylib
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_smoke.so
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_dump.so
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke/qt_smoke.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libsmokeqt.a
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/qtdefines
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/config.xml
mkdir -p ../src-build;
cd ../src-build; \
	cmake ../src \
	      -DR_LIBRARIES="-F/Library/Frameworks/R.framework/.. -framework R" \
	      -DR_INCLUDES=/Library/Frameworks/R.framework/Resources/include \
	      -DCMAKE_INSTALL_PREFIX=../src; \
	make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Checking whether CXX compiler has -isysroot
-- Checking whether CXX compiler has -isysroot - yes
-- Checking whether CXX compiler supports OSX deployment target flag
-- Checking whether CXX compiler supports OSX deployment target flag - yes
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - not found.
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - found
-- Looking for QT_MAC_USE_COCOA
-- Looking for QT_MAC_USE_COCOA - found
-- Found Qt4: /usr/bin/qmake (found suitable version "4.7.0", required is "4.0.0")
-- Could NOT find Qt4 (missing:  QT_QTUITOOLS_INCLUDE_DIR) (found suitable version "4.7.0", required is "4.0.0")
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build
[  2%] Generating moc_EventLoop.cxx
Scanning dependencies of target qtbase
[  5%] Building CXX object CMakeFiles/qtbase.dir/init.cpp.o
[  7%] Building CXX object CMakeFiles/qtbase.dir/EventLoop.cpp.o
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23: warning: deprecated conversion from string constant to 'char*'
/Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23: warning: deprecated conversion from string constant to 'char*'
[ 10%] Building CXX object CMakeFiles/qtbase.dir/convert.cpp.o
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[ 28%] Building CXX object CMakeFiles/qtbase.dir/ClassFactory.cpp.o
[ 31%] Building CXX object CMakeFiles/qtbase.dir/Class.cpp.o
[ 34%] Building CXX object CMakeFiles/qtbase.dir/SmokeClass.cpp.o
[ 36%] Building CXX object CMakeFiles/qtbase.dir/MocClass.cpp.o
[ 39%] Building CXX object CMakeFiles/qtbase.dir/RClass.cpp.o
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Linking CXX shared library qtbase.so
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Install the project...
-- Install configuration: ""
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/./qtbase.so
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/qtbase/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'qtbase.Rnw' 
** testing if installed package can be loaded
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.

* DONE (qtbase)