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Package 393/515HostnameOS / ArchBUILDCHECKBUILD BIN
qtpaint 1.0.0
Michael Lawrence
Snapshot Date: 2012-03-11 18:21:27 -0700 (Sun, 11 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/qtpaint
Last Changed Rev: 59921 / Revision: 63752
Last Changed Date: 2011-10-31 16:00:44 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: qtpaint
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-examples --no-multiarch qtpaint_1.0.0.tar.gz
StartedAt: 2012-03-12 03:13:05 -0700 (Mon, 12 Mar 2012)
EndedAt: 2012-03-12 03:14:34 -0700 (Mon, 12 Mar 2012)
EllapsedTime: 89.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: qtpaint.Rcheck
Warnings: 7

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using options '--no-examples --no-vignettes'
* checking for file 'qtpaint/DESCRIPTION' ... OK
* this is package 'qtpaint' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'qtpaint/src' contains object files.
* checking if there is a namespace ... OK
* checking whether package 'qtpaint' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL version 2 or later
Standardizable: TRUE
Standardized license specification:
  GPL (>= 2)
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... NOTE
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
qscene.lines: no visible binding for global variable 'scene_addLines'
qscene.points: no visible binding for global variable 'scene_addPoints'
qscene.rect: no visible binding for global variable 'scene_addRect'
qscene.segments: no visible binding for global variable
  'scene_addSegments'
qsetItemFlags: no visible binding for global variable
  'qt_qsetItemFlags'
qsetTextItemInteraction: no visible binding for global variable
  'qt_qsetTextItemInteraction'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
* checking Rd \usage sections ... NOTE
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 7 warnings, see
  '/Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00check.log'
for details

qtpaint.Rcheck/00install.out:

* installing *source* package 'qtpaint' ...
** libs
** arch - i386
mkdir -p ../kdebindings-build;
mkdir -p ../src-build;
cd ../kdebindings-build; \
	cmake ../kdebindings \
	      -DCMAKE_INSTALL_PREFIX=../inst/local -DQTBASE_DIR=/Library/Frameworks/R.framework/Versions/2.14/Resources/library/qtbase \
	      -DR_INCLUDE_DIR=/Library/Frameworks/R.framework/Resources/include; \
	DYLD_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib/i386:/Library/Frameworks/R.framework/Resources/lib/i386:/Library/Frameworks/R.framework/Resources/lib/i386:/Library/Frameworks/R.framework/Resources/lib/i386:/Library/Frameworks/R.framework/Versions/2.14/Resources/library/qtbase/local/lib \
	LD_LIBRARY_PATH=:/Library/Frameworks/R.framework/Versions/2.14/Resources/library/qtbase/local/lib make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Checking whether CXX compiler has -isysroot
-- Checking whether CXX compiler has -isysroot - yes
-- Checking whether CXX compiler supports OSX deployment target flag
-- Checking whether CXX compiler supports OSX deployment target flag - yes
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - not found.
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - found
-- Looking for QT_MAC_USE_COCOA
-- Looking for QT_MAC_USE_COCOA - found
-- Found Qt4: /usr/bin/qmake (found version "4.7.0")
-- Build qanviz smoke... 
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    R_INCLUDE_DIR


-- Build files have been written to: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/kdebindings-build
Scanning dependencies of target generate_smoke
[  0%] Generating smokedata.cpp, x_1.cpp
using generator "/Library/Frameworks/R.framework/Versions/2.14/Resources/library/qtbase/local/bin/../lib/smokegen/generator_smoke.so" 
include directory "/Library/Frameworks/QtCore.framework;/Library/Frameworks/QtCore.framework" doesn't exist 
parsing "/Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/kdebindings/smoke/qanviz/qanviz_includes.h" 
Generating SMOKE sources... 
preparing SMOKE data [qanviz]
writing out smokedata.cpp [qanviz]
writing out x_*.cpp [qanviz]
Done. 
[100%] Built target generate_smoke
Install the project...
-- Install configuration: ""
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/inst/local/include/smoke/qanviz_smoke.h
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/kdebindings/../src-build/smokedata.cpp
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/kdebindings/../src-build/x_1.cpp
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/kdebindings/../src-build/qanviz_includes.h
cd ../src-build; \
	cmake ../src \
	      -DCMAKE_INSTALL_PREFIX=../src \
	      -DR_LIBRARIES="-dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -F/Library/Frameworks/R.framework/.. -framework R" \
	      -DR_INCLUDES=/Library/Frameworks/R.framework/Resources/include \
	      -DQTBASE_DIR=/Library/Frameworks/R.framework/Versions/2.14/Resources/library/qtbase; \
	make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Checking whether CXX compiler has -isysroot
-- Checking whether CXX compiler has -isysroot - yes
-- Checking whether CXX compiler supports OSX deployment target flag
-- Checking whether CXX compiler supports OSX deployment target flag - yes
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - not found.
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - found
-- Looking for QT_MAC_USE_COCOA
-- Looking for QT_MAC_USE_COCOA - found
-- Found Qt4: /usr/bin/qmake (found suitable version "4.7.0", required is "4.4.0")
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/src-build
[  4%] Generating moc_PlotView.cxx
[  8%] Generating moc_Layer.cxx
[ 13%] Generating moc_RLayer.cxx
Scanning dependencies of target qtpaint
[ 17%] Building CXX object CMakeFiles/qtpaint.dir/Layer.cpp.o
[ 21%] Building CXX object CMakeFiles/qtpaint.dir/Painter.cpp.o
[ 26%] Building CXX object CMakeFiles/qtpaint.dir/QtPainter.cpp.o
[ 30%] Building CXX object CMakeFiles/qtpaint.dir/imports.cpp.o
[ 34%] Building CXX object CMakeFiles/qtpaint.dir/OpenGLPainter.cpp.o
[ 39%] Building CXX object CMakeFiles/qtpaint.dir/RLayer.cpp.o
[ 43%] Building CXX object CMakeFiles/qtpaint.dir/init.cpp.o
[ 47%] Building CXX object CMakeFiles/qtpaint.dir/PainterWrappers.cpp.o
[ 52%] Building CXX object CMakeFiles/qtpaint.dir/ScenePainter.cpp.o
[ 56%] Building CXX object CMakeFiles/qtpaint.dir/paintUtils.cpp.o
[ 60%] Building CXX object CMakeFiles/qtpaint.dir/PlotView.cpp.o
[ 65%] Building CXX object CMakeFiles/qtpaint.dir/scene.cpp.o
[ 69%] Building CXX object CMakeFiles/qtpaint.dir/QtBasePainter.cpp.o
[ 73%] Building CXX object CMakeFiles/qtpaint.dir/convert.cpp.o
[ 78%] Building CXX object CMakeFiles/qtpaint.dir/TestWidget.cpp.o
[ 82%] Building CXX object CMakeFiles/qtpaint.dir/smokedata.cpp.o
[ 86%] Building CXX object CMakeFiles/qtpaint.dir/x_1.cpp.o
[ 91%] Building CXX object CMakeFiles/qtpaint.dir/moc_Layer.cxx.o
[ 95%] Building CXX object CMakeFiles/qtpaint.dir/moc_RLayer.cxx.o
[100%] Building CXX object CMakeFiles/qtpaint.dir/moc_PlotView.cxx.o
Linking CXX shared library qtpaint.so
[100%] Built target qtpaint
Install the project...
-- Install configuration: ""
-- Installing: /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/00_pkg_src/qtpaint/src/./qtpaint.so
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qtpaint.Rcheck/qtpaint/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'intro.Rnw' 
** testing if installed package can be loaded
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.

* DONE (qtpaint)