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Package 10/472HostnameOS / ArchBUILDCHECKBUILD BIN
ADaCGH2 1.3.0
Ramon Diaz-Uriarte
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ADaCGH2
Last Changed Rev: 56008 / Revision: 56351
Last Changed Date: 2011-06-06 03:29:55 -0700 (Mon, 06 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386 [ ERROR ] skipped  skipped 

Summary

Package: ADaCGH2
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ADaCGH2
StartedAt: 2011-06-22 00:33:33 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 00:33:35 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 1.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘ADaCGH2/DESCRIPTION’ ... OK
* preparing ‘ADaCGH2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package ‘ADaCGH2’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:65: warning: unused variable ‘totalNorm’
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c: In function ‘ad_FindLocalPeaks’:
r_haarseg.c:128: warning: unused variable ‘j’
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:64: warning: ‘highNonNormed’ may be used uninitialized in this function
r_haarseg.c:63: warning: ‘lowNonNormed’ may be used uninitialized in this function
r_haarseg.c:60: warning: ‘highWeightSum’ may be used uninitialized in this function
r_haarseg.c:59: warning: ‘lowWeightSum’ may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmpVTTiLG/Rinst32156294/ADaCGH2/libs/i386
** R
Error in parse(outFile) : 
  /private/tmp/RtmpVTTiLG/Rbuild2c4a0edb/ADaCGH2/R/ADaCGH-2.R:2851:44: unexpected ‘||’
2850:   ## Improved as per Duncan Murdoch's suggestion, email 2011-05-28
2851:   if(any(is.na(x)) || any(is.infinite(x))) ||
                                                 ^
ERROR: unable to collate and parse R files for package ‘ADaCGH2’
* removing ‘/private/tmp/RtmpVTTiLG/Rinst32156294/ADaCGH2’
      -----------------------------------
ERROR: package installation failed