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Package 62/470HostnameOS / ArchBUILDCHECKBUILD BIN
Bioconductor 1.1.9
Biocore Team c/o BioC user list
Snapshot Date: 2011-06-14 19:20:23 -0700 (Tue, 14 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Bioconductor
Last Changed Rev: 56084 / Revision: 56189
Last Changed Date: 2011-06-09 11:56:04 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Bioconductor
Version: 1.1.9
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings Bioconductor_1.1.9.tar.gz
StartedAt: 2011-06-14 23:44:16 -0700 (Tue, 14 Jun 2011)
EndedAt: 2011-06-14 23:44:24 -0700 (Tue, 14 Jun 2011)
EllapsedTime: 8.1 seconds
RetCode: 0
Status:  OK 
CheckDir: Bioconductor.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/Bioconductor.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-06 r56067)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Bioconductor/DESCRIPTION’ ... OK
* this is package ‘Bioconductor’ version ‘1.1.9’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Bioconductor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
updateBioconductorPackage : bootstrap: no visible binding for global
  variable ‘contribUrl’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

Bioconductor.Rcheck/00install.out:

* installing *source* package ‘Bioconductor’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Bioconductor package version 1.1.9 loaded, type ?biocLite for help

* DONE (Bioconductor)

Bioconductor.Rcheck/Bioconductor-Ex.timings:

nameusersystemelapsed
biocLite0.0160.0000.017
biocinstallRepos0.0000.0000.003