DECIPHER 1.0.0
Erik Wright
| Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/DECIPHER | | Last Changed Rev: 59920 / Revision: 61898 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'DECIPHER' ...
** libs
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ClusterML.c -o ClusterML.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ClusterNJ.c -o ClusterNJ.o
ClusterNJ.c: In function 'clusterNJ':
ClusterNJ.c:263:0: warning: ignoring #pragma omp parallel
ClusterNJ.c:273:0: warning: ignoring #pragma omp critical
ClusterNJ.c:433:0: warning: ignoring #pragma omp parallel
ClusterNJ.c:445:0: warning: ignoring #pragma omp parallel
ClusterNJ.c:193:18: warning: 'rPercentComplete' may be used uninitialized in this function
ClusterNJ.c:194:16: warning: 'total' may be used uninitialized in this function
ClusterNJ.c:195:12: warning: 'percentComplete' may be used uninitialized in this function
ClusterNJ.c:195:29: warning: 'utilsPackage' may be used uninitialized in this function
ClusterNJ.c:192:56: warning: 'minR' may be used uninitialized in this function
ClusterNJ.c:192:62: warning: 'minC' may be used uninitialized in this function
ClusterNJ.c:506:19: warning: 'longestLeaf' may be used uninitialized in this function
ClusterNJ.c: In function 'reclusterNJ':
ClusterNJ.c:590:19: warning: 'longestLeaf' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ClusterUPGMA.c -o ClusterUPGMA.o
ClusterUPGMA.c: In function 'clusterUPGMA':
ClusterUPGMA.c:180:0: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:190:0: warning: ignoring #pragma omp critical
ClusterUPGMA.c:340:0: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:352:0: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:122:18: warning: 'rPercentComplete' may be used uninitialized in this function
ClusterUPGMA.c:123:16: warning: 'total' may be used uninitialized in this function
ClusterUPGMA.c:124:12: warning: 'percentComplete' may be used uninitialized in this function
ClusterUPGMA.c:124:29: warning: 'utilsPackage' may be used uninitialized in this function
ClusterUPGMA.c:121:56: warning: 'minR' may be used uninitialized in this function
ClusterUPGMA.c:121:62: warning: 'minC' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c CommonGaps.c -o CommonGaps.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ConsensusSequence.c -o ConsensusSequence.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c DistanceMatrix.c -o DistanceMatrix.o
DistanceMatrix.c: In function 'distMatrix':
DistanceMatrix.c:171:0: warning: ignoring #pragma omp parallel
DistanceMatrix.c:131:25: warning: 'rPercentComplete' may be used uninitialized in this function
DistanceMatrix.c:133:12: warning: 'percentComplete' may be used uninitialized in this function
DistanceMatrix.c:133:29: warning: 'utilsPackage' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_decipher.c -o R_init_decipher.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/Biostrings/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/RSQLite/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -I"E:/biocbld/bbs-2.9-bioc/R/library/stats/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ReplaceChars.c -o ReplaceChars.o
gcc -shared -s -static-libgcc -o DECIPHER.dll tmp.def Biostrings_stubs.o ClusterML.o ClusterNJ.o ClusterUPGMA.o CommonGaps.o ConsensusSequence.o DistanceMatrix.o R_init_decipher.o ReplaceChars.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/DECIPHER.buildbin-libdir/DECIPHER/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'DECIPHERing.Rnw'
'FindChimeras.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DECIPHER' as DECIPHER_1.0.0.zip
* DONE (DECIPHER)