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Package 190/490HostnameOS / ArchBUILDCHECKBUILD BIN
GeneTraffic 1.25.0
Daniel Iordan
Snapshot Date: 2011-08-26 18:22:28 -0700 (Fri, 26 Aug 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneTraffic
Last Changed Rev: 54802 / Revision: 57680
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ ERROR ] OK 

Summary

Package: GeneTraffic
Version: 1.25.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneTraffic_1.25.0.tar.gz
StartedAt: 2011-08-27 02:37:32 -0700 (Sat, 27 Aug 2011)
EndedAt: 2011-08-27 02:38:49 -0700 (Sat, 27 Aug 2011)
EllapsedTime: 77.5 seconds
RetCode: 1
Status:  ERROR 
CheckDir: GeneTraffic.Rcheck
Warnings: NA

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/GeneTraffic.Rcheck'
* using R Under development (unstable) (2011-08-03 r56617)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GeneTraffic/DESCRIPTION' ... OK
* this is package 'GeneTraffic' version '1.25.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneTraffic' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Assignments in \usage in documentation object 'GTLogin':
  session <- GTLogin(server)

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... ERROR
Running examples in 'GeneTraffic-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GTLoadExpression
> ### Title: Reads from a GeneTraffic project summary file
> ### Aliases: GTLoadExpression
> ### Keywords: IO
> 
> ### ** Examples
> 
>     #From a file:
> 	eset <- GTLoadExpression(filename="Project.zip")
Error: 'zip.file.extract' is defunct.
Use 'unzip' instead.
See help("Defunct")
Execution halted

GeneTraffic.Rcheck/00install.out:

* installing *source* package 'GeneTraffic' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneTraffic)

GeneTraffic.Rcheck/GeneTraffic-Ex.timings:

nameusersystemelapsed
GTGetProjectList000
GTGetProjectSummary0.0010.0000.000