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Package 276/472HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.5.0
Reid F. Thompson
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MassArray
Last Changed Rev: 56090 / Revision: 56351
Last Changed Date: 2011-06-09 17:02:42 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: MassArray
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MassArray_1.5.0.tar.gz
StartedAt: 2011-06-22 03:59:40 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 04:01:11 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 90.7 seconds
RetCode: 0
Status:  OK 
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/MassArray.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MassArray/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MassArray’ version ‘1.5.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘MassArray’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* installing *source* package ‘MassArray’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘MassArray.Rnw’ 
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.0260.0040.029
MassArrayData-class0.0030.0010.003
MassArrayFragment-class0.0030.0000.004
MassArrayPeak-class0.0030.0000.003
MassArraySpectrum-class0.0020.0010.002
ampliconPrediction3.1460.0163.171
analyzeCpGs0.2950.0030.306
bisConvert0.0010.0000.000
calcMW0.0020.0000.002
calcMeth0.0220.0020.024
calcPercentAdduct0.0920.0010.094
calcPercentConversion0.0660.0020.067
combine5.6030.0285.649
convControl0.0350.0030.039
countCGs0.0010.0000.001
createWiggle0.0170.0030.021
estimatePrimerDimer0.1080.0050.119
evaluateSNPs36.924 0.07837.182
expandSequence0.0010.0000.001
findCollisions000
findFragments0.0240.0020.026
findPeaks0.0010.0000.001
identifySNPs0.0380.0010.039
inSilicoFragmentation0.0150.0020.017
isAssayable0.0010.0000.001
numCollisions0.0010.0000.001
plot.MassArrayData0.0530.0010.055
position0.0220.0010.029
revComplement0.0010.0000.001
rnaDigest0.0110.0020.018
samples0.0330.0020.046
sum.MassArraySpectrum0.7680.0050.808