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Package 356/514HostnameOS / ArchBUILDCHECKBUILD BIN
PAN 1.0.2
Xin Wang
Snapshot Date: 2012-03-19 18:21:19 -0700 (Mon, 19 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/PAN
Last Changed Rev: 62731 / Revision: 64131
Last Changed Date: 2012-02-13 08:55:31 -0800 (Mon, 13 Feb 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: PAN
Version: 1.0.2
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings PAN_1.0.2.tar.gz
StartedAt: 2012-03-20 01:50:41 -0700 (Tue, 20 Mar 2012)
EndedAt: 2012-03-20 01:51:42 -0700 (Tue, 20 Mar 2012)
EllapsedTime: 61.1 seconds
RetCode: 0
Status:  OK 
CheckDir: PAN.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/PAN.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PAN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PAN’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘PAN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

PAN.Rcheck/00install.out:

* installing *source* package ‘PAN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘PAN-Vignette.Rnw’ 
** testing if installed package can be loaded

* DONE (PAN)

PAN.Rcheck/PAN-Ex.timings:

nameusersystemelapsed
BetaMixture-class000
PAN-class000
assoScore0.020.000.02
buildPAN1.6720.0321.712
cosineSim0.0040.0000.004
data-Bakal20070.0440.0000.047
exportPAN000
fitBM000
fitNULL28.733 0.05229.838
infer0.8880.0040.948
permNULL0.1120.0000.113
pvclustModule0.0000.0000.001
sigModules000
summarize0.0400.0000.043
view0.3610.0040.372
viewLegend000
viewNestedModules000
viewPAN000