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Package 382/516HostnameOS / ArchBUILDCHECKBUILD BIN
PREDA 1.0.0
Francesco Ferrari
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/PREDA
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: PREDA
Version: 1.0.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch PREDA_1.0.0.tar.gz
StartedAt: 2012-01-09 04:50:54 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 04:52:24 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 89.2 seconds
RetCode: 0
Status:  OK  
CheckDir: PREDA.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/PREDA.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PREDA/DESCRIPTION' ... OK
* this is package 'PREDA' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'Rmpi' 'rsprng'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'PREDA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Unable to register TclNotifier window class

This application has requested the Runtime to terminate it in an unusual way.
Please contact the application's support team for more information.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

PREDA.Rcheck/00install.out:

* installing *source* package 'PREDA' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'PREDAclasses.Rnw' using 'latin1' 
   'PREDAtutorial.Rnw' using 'latin1' 
** testing if installed package can be loaded

* DONE (PREDA)

PREDA.Rcheck/PREDA-Ex.timings:

nameusersystemelapsed
DataForPREDA-class000
GenomicAnnotations-class000
GenomicAnnotations2GenomicAnnotationsForPREDA000
GenomicAnnotationsForPREDA-class000
GenomicAnnotationsForPREDAFromfile000
GenomicAnnotationsFromLibrary000
GenomicAnnotationsFromfile000
GenomicRegions-class0.120.000.13
GenomicRegions2dataframe000
GenomicRegionsFindOverlap000
PREDADataAndResults-class000
PREDAResults-class000
PREDAResults2GenomicRegions000
PREDA_main000
SODEGIRpreprocessingGE000
StatisticsForPREDA-class000
StatisticsForPREDAFromdataframe000
StatisticsForPREDAFromfile000
analysesNames1.660.051.92
computeDatasetSignature000
eset2GenomicAnnotations000
genomePlot000
preprocessingGE000
statisticsForPREDAfromEset000