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Package 396/472HostnameOS / ArchBUILDCHECKBUILD BIN
RPA 1.9.14
Leo Lahti
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RPA
Last Changed Rev: 56329 / Revision: 56351
Last Changed Date: 2011-06-20 14:30:19 -0700 (Mon, 20 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: RPA
Version: 1.9.14
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RPA_1.9.14.tar.gz
StartedAt: 2011-06-22 05:09:48 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 05:11:01 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 73.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: RPA.Rcheck
Warnings: 1

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/RPA.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RPA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RPA’ version ‘1.9.14’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RPA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘hyperparameter.update’ ‘s2.update’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘rpa.fit.test.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.9-bioc/meat/RPA.Rcheck/00check.log’
for details

RPA.Rcheck/00install.out:

* installing *source* package ‘RPA’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

     Package   
[1,] "affydata"
     LibPath                                                          
[1,] "/Library/Frameworks/R.framework/Versions/2.14/Resources/library"
     Item       Title                        
[1,] "Dilution" "AffyBatch instance Dilution"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RPA.Rnw’ 
** testing if installed package can be loaded
     Package   
[1,] "affydata"
     LibPath                                                          
[1,] "/Library/Frameworks/R.framework/Versions/2.14/Resources/library"
     Item       Title                        
[1,] "Dilution" "AffyBatch instance Dilution"

RPA Copyright (C) 2008-2011 Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.

This is free software, and you are welcome to redistribute it under the FreeBSD open source license, see the licensing terms for details.

* DONE (RPA)

RPA.Rcheck/RPA-Ex.timings:

nameusersystemelapsed
RPA-package000
RPA.iteration0.0010.0010.001
RPA.pointestimate0.0000.0000.001
estimate.affinities0.0000.0000.001
get.probe.noise.estimates11.190 1.21712.453
online.quantile0.0010.0000.000
plot000
rpa-class0.0020.0000.002
rpa0.0010.0000.001
rpa.fit-class0.0020.0000.002
rpa.fit0.0000.0000.001
rpa.list-class0.0010.0000.002
rpa.plot000
rpa2eset000
toydata0.0010.0000.001