Package: RamiGO

Version: 1.0.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RamiGO_1.0.0.tar.gz

StartedAt: 2012-01-09 05:01:17 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 05:01:58 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 40.7 seconds

RetCode: 1

Status:  ERROR

CheckDir: RamiGO.Rcheck

Warnings: NA

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/RamiGO.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RamiGO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RamiGO' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RamiGO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'RamiGO-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AmigoDot
> ### Title: AmigoDot constructor and accessors
> ### Aliases: AmigoDot agraph agraph<- adjMatrix adjMatrix<- annot annot<-
> ###   relations relations<- leaves leaves<- agraph,AmigoDot-method
> ###   agraph<-,AmigoDot-method adjMatrix,AmigoDot-method
> ###   adjMatrix<-,AmigoDot-method annot,AmigoDot-method
> ###   annot<-,AmigoDot-method relations,AmigoDot-method
> ###   relations<-,AmigoDot-method leaves,AmigoDot-method
> ###   leaves<-,AmigoDot-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> ## set GO ID's and color
> goIDs <- c("GO:0051130","GO:0019912","GO:0005783")
> color <- c("lightblue","red","yellow")
> 
> dd <- getAmigoTree(goIDs=goIDs,color=color,
+   filename="example",picType="dot",saveResult=FALSE)
> tt <- readAmigoDot(object=dd)
Loading required package: tcltk
Loading Tcl/Tk interface ...Unable to register TclNotifier window class

This application has requested the Runtime to terminate it in an unusual way.
Please contact the application's support team for more information.

* installing *source* package 'RamiGO' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RamiGO.Rnw' 
** testing if installed package can be loaded

* DONE (RamiGO)

name	user	system	elapsed
AmigoDot-class	0	0	0