Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 368/472HostnameOS / ArchBUILDCHECKBUILD BIN
RbcBook1 1.21.0
Vince Carey
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RbcBook1
Last Changed Rev: 54802 / Revision: 56351
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: RbcBook1
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RbcBook1_1.21.0.tar.gz
StartedAt: 2011-06-22 04:50:48 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 04:51:34 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 46.2 seconds
RetCode: 0
Status:  OK 
CheckDir: RbcBook1.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/RbcBook1.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RbcBook1/DESCRIPTION’ ... OK
* this is package ‘RbcBook1’ version ‘1.21.0’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RbcBook1’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   7.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcStangle: possible error in grep("chapter{", txt,
  extended = FALSE): unused argument(s) (extended =
  FALSE)
checkPackage: possible error in sub("Rpackage{", "",
  sub("}", "", unique(p), extended = FALSE), extended
  = FALSE): unused argument(s) (extended = FALSE)
checkPackage: possible error in sub("}", "",
  unique(p), extended = FALSE): unused argument(s)
  (extended = FALSE)
checkRnw: possible error in
  grep("caption.*%.*[a-zA-Z]", txt, extended =
  FALSE): unused argument(s) (extended = FALSE)
remapAff: no visible binding for global variable
  ‘hgu95av2SYMBOL’
* checking Rd files ... NOTE
prepare_Rd: requireAllBook1.Rd:9-10: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
‘library’ or ‘require’ call not declared from: ‘rpart’
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RbcBook1.Rcheck/00install.out:

* installing *source* package ‘RbcBook1’ ...
** R
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RbcBook1.Rnw’ 
** testing if installed package can be loaded

* DONE (RbcBook1)

RbcBook1.Rcheck/RbcBook1-Ex.timings:

nameusersystemelapsed
bcStangle000
bcSweave000
bcr1.0400.0561.375
checkVerbatimLines0.0110.0010.013
imageSize0.0000.0000.001
perf0.0030.0010.003
requireAllBook1000
rpart2gNEL0.1770.0230.325