chipseq 1.3.0
Biocore Team c/o BioC user list
| Snapshot Date: 2011-06-03 07:21:36 -0700 (Fri, 03 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq | | Last Changed Rev: 54802 / Revision: 55980 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=chipseq.buildbin-libdir chipseq_1.3.0.tar.gz'
>>>>>>>
* installing *source* package ‘chipseq’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rlesumprod.c -o rlesumprod.o
rlesumprod.c: In function ‘rle_sum_prod’:
rlesumprod.c:24: warning: operation on ‘i1’ may be undefined
rlesumprod.c:25: warning: operation on ‘i2’ may be undefined
rlesumprod.c:27: warning: operation on ‘i1’ may be undefined
rlesumprod.c:28: warning: operation on ‘i2’ may be undefined
rlesumprod.c:34: warning: operation on ‘i1’ may be undefined
rlesumprod.c:35: warning: operation on ‘i2’ may be undefined
rlesumprod.c: In function ‘rle_sum_any’:
rlesumprod.c:61: warning: operation on ‘i1’ may be undefined
rlesumprod.c:62: warning: operation on ‘i2’ may be undefined
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o chipseq.so rlesumprod.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rlesumprod.c -o rlesumprod.o
rlesumprod.c: In function ‘rle_sum_prod’:
rlesumprod.c:24: warning: operation on ‘i1’ may be undefined
rlesumprod.c:25: warning: operation on ‘i2’ may be undefined
rlesumprod.c:27: warning: operation on ‘i1’ may be undefined
rlesumprod.c:28: warning: operation on ‘i2’ may be undefined
rlesumprod.c:34: warning: operation on ‘i1’ may be undefined
rlesumprod.c:35: warning: operation on ‘i2’ may be undefined
rlesumprod.c: In function ‘rle_sum_any’:
rlesumprod.c:61: warning: operation on ‘i1’ may be undefined
rlesumprod.c:62: warning: operation on ‘i2’ may be undefined
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o chipseq.so rlesumprod.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rlesumprod.c -o rlesumprod.o
rlesumprod.c: In function ‘rle_sum_prod’:
rlesumprod.c:24: warning: operation on ‘i1’ may be undefined
rlesumprod.c:25: warning: operation on ‘i2’ may be undefined
rlesumprod.c:27: warning: operation on ‘i1’ may be undefined
rlesumprod.c:28: warning: operation on ‘i2’ may be undefined
rlesumprod.c:34: warning: operation on ‘i1’ may be undefined
rlesumprod.c:35: warning: operation on ‘i2’ may be undefined
rlesumprod.c: In function ‘rle_sum_any’:
rlesumprod.c:61: warning: operation on ‘i1’ may be undefined
rlesumprod.c:62: warning: operation on ‘i2’ may be undefined
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o chipseq.so rlesumprod.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Attaching package: ‘IRanges’
The following object(s) are masked from ‘package:base’:
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘Workflow.Rnw’
** testing if installed package can be loaded
* DONE (chipseq)
>>>>>>>
>>>>>>> FIXING LINKS FOR chipseq.buildbin-libdir/chipseq/libs/i386/chipseq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "chipseq.buildbin-libdir/chipseq/libs/i386/chipseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/i386/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/i386/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "chipseq.buildbin-libdir/chipseq/libs/i386/chipseq.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR chipseq.buildbin-libdir/chipseq/libs/ppc/chipseq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "chipseq.buildbin-libdir/chipseq/libs/ppc/chipseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/ppc/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/ppc/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "chipseq.buildbin-libdir/chipseq/libs/ppc/chipseq.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR chipseq.buildbin-libdir/chipseq/libs/x86_64/chipseq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "chipseq.buildbin-libdir/chipseq/libs/x86_64/chipseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/x86_64/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "chipseq.buildbin-libdir/chipseq/libs/x86_64/chipseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "chipseq.buildbin-libdir/chipseq/libs/x86_64/chipseq.so"