Package: cn.farms

Version: 1.2.0

Command: rm -rf cn.farms.buildbin-libdir && mkdir cn.farms.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=cn.farms.buildbin-libdir cn.farms_1.2.0.tar.gz

StartedAt: 2012-01-09 06:27:33 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 06:27:49 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 16.1 seconds

RetCode: 0

Status:  OK

PackageFile: cn.farms_1.2.0.zip

PackageFileSize: 2.429 MiB

* installing *source* package 'cn.farms' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_cnfarms.c -o R_init_cnfarms.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -mtune=core2 -c laplace.cpp -o laplace.o
laplace.cpp: In function 'SEXPREC* momentsGauss(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
laplace.cpp:420:6: warning: unused variable 'method'
laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)':
laplace.cpp:197:9: warning: 'I1left' may be used uninitialized in this function
laplace.cpp:198:9: warning: 'I1right' may be used uninitialized in this function
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c sparse_farms.c -o sparse_farms.o
sparse_farms.c: In function 'normData':
sparse_farms.c:191:10: warning: unused variable 'k'
sparse_farms.c:191:6: warning: unused variable 'i'
sparse_farms.c: In function 'sparseFarmsC':
sparse_farms.c:262:41: warning: unused variable 'invpPsi'
sparse_farms.c:259:9: warning: unused variable 'sumhelp'
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o cn.farms.dll tmp.def R_init_cnfarms.o laplace.o sparse_farms.o -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/cn.farms.buildbin-libdir/cn.farms/libs/x64
** R
** demo
** inst
** preparing package for lazy loading
================================================================================
Large dataset support for 'oligo/crlmm': Enabled
    - Probesets: 20,000
    - Samples..:    100
    - Path.....: D:/biocbld/bbs-2.9-bioc/tmpdir/RtmpQZHACZ/R.INSTALL10186efe4997/cn.farms
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Use options(cluster=makeCluster(...))
================================================================================
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'cn.farms.Rnw' 
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Enabled
    - Probesets: 20,000
    - Samples..:    100
    - Path.....: D:/biocbld/bbs-2.9-bioc/tmpdir/RtmpQZHACZ/R.INSTALL10186efe4997/cn.farms
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Use options(cluster=makeCluster(...))
================================================================================
* MD5 sums
packaged installation of 'cn.farms' as cn.farms_1.2.0.zip

* DONE (cn.farms)