Package: genoCN

Version: 1.6.0

Command: rm -rf genoCN.buildbin-libdir && mkdir genoCN.buildbin-libdir && E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=genoCN.buildbin-libdir genoCN_1.6.0.tar.gz

StartedAt: 2012-01-09 06:25:45 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 06:25:52 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 7.5 seconds

RetCode: 0

Status:  OK

PackageFile: genoCN_1.6.0.zip

PackageFileSize: 1.134 MiB

* installing *source* package 'genoCN' ...
** libs
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c tnorm_mle.c -o tnorm_mle.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c utility.c -o utility.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c xCNV.c -o xCNV.o
xCNV.c: In function 'emiss':
xCNV.c:317:25: warning: unused variable 'k'
xCNV.c:317:16: warning: unused variable 'K'
xCNV.c: In function 'baum_welch':
xCNV.c:787:20: warning: unused variable 'sd_b_tmp'
xCNV.c:787:10: warning: unused variable 'mu_b_tmp'
xCNV.c:768:31: warning: 'nGtp' may be used uninitialized in this function
xCNV.c:769:18: warning: 'pbf' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o genoCN.dll tmp.def tnorm_mle.o utility.o xCNV.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/genoCN.buildbin-libdir/genoCN/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'genoCN.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genoCN' as genoCN_1.6.0.zip

* DONE (genoCN)