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Package 245/472HostnameOS / ArchBUILDCHECKBUILD BIN
iterativeBMAsurv 1.11.0
Ka Yee Yeung
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/iterativeBMAsurv
Last Changed Rev: 54802 / Revision: 56351
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: iterativeBMAsurv
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch iterativeBMAsurv_1.11.0.tar.gz
StartedAt: 2011-06-22 03:42:07 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 03:44:20 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 132.7 seconds
RetCode: 0
Status:  OK 
CheckDir: iterativeBMAsurv.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/iterativeBMAsurv.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iterativeBMAsurv/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iterativeBMAsurv’ version ‘1.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘iterativeBMAsurv’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: predictBicSurv.Rd:46: Dropping empty section \note
prepare_Rd: predictiveAssessCategory.Rd:52: Dropping empty section \note
prepare_Rd: printTopGenes.Rd:49: Dropping empty section \note
prepare_Rd: singleGeneCoxph.Rd:54: Dropping empty section \note
prepare_Rd: testCens.Rd:13-14: Dropping empty section \details
prepare_Rd: testSurv.Rd:13-14: Dropping empty section \details
prepare_Rd: trainCens.Rd:13-14: Dropping empty section \details
prepare_Rd: trainSurv.Rd:13-14: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

iterativeBMAsurv.Rcheck/00install.out:

* installing *source* package ‘iterativeBMAsurv’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: leaps
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘iterativeBMAsurv.Rnw’ 
** testing if installed package can be loaded

* DONE (iterativeBMAsurv)

iterativeBMAsurv.Rcheck/iterativeBMAsurv-Ex.timings:

nameusersystemelapsed
crossVal3.6300.0483.764
imageplot.iterate.bma.surv28.872 0.14529.472
iterateBMAsurv.train14.508 0.07514.823
iterateBMAsurv.train.predict.assess1.6780.0241.768
iterateBMAsurv.train.wrapper14.162 0.06514.691
iterativeBMAsurv-package5.1250.0555.275
predictBicSurv14.707 0.07414.993
predictiveAssessCategory15.478 0.09215.766
printTopGenes0.7250.0070.790
singleGeneCoxph0.7080.0060.751