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Package 299/516HostnameOS / ArchBUILDCHECKBUILD BIN
maSigPro 1.26.0
Maria Jose Nueda
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/maSigPro
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  ERROR 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maSigPro
Version: 1.26.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch maSigPro_1.26.0.tar.gz
StartedAt: 2012-01-09 04:06:47 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 04:08:00 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:  OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/maSigPro.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'maSigPro/R/zzz.R':
  .First.lib calls:
    require(Biobase)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

maSigPro.Rcheck/00install.out:

* installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maSigPro-tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (maSigPro)

maSigPro.Rcheck/maSigPro-Ex.timings:

nameusersystemelapsed
PlotGroups0.020.000.01
PlotProfiles0.000.010.02
T.fit8.510.028.53
average.rows000
data.abiotic0.030.000.03
edesign.OD000
edesign.abiotic000
edesignCT000
edesignDR000
get.siggenes3.580.003.58
i.rank000
maSigPro5.660.065.72
make.design.matrix0.010.000.01
p.vector2.060.012.08
position000
reg.coeffs000
see.genes1.620.241.86
stepback0.030.000.03
stepfor0.140.000.15
suma2Venn0.020.000.01
two.ways.stepback0.140.000.14
two.ways.stepfor0.150.000.16