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Package 309/472HostnameOS / ArchBUILDCHECKBUILD BIN
netresponse 1.5.09
Leo Lahti
Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/netresponse
Last Changed Rev: 56133 / Revision: 56351
Last Changed Date: 2011-06-13 03:52:26 -0700 (Mon, 13 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: netresponse
Version: 1.5.09
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch netresponse_1.5.09.tar.gz
StartedAt: 2011-06-22 04:20:31 -0700 (Wed, 22 Jun 2011)
EndedAt: 2011-06-22 04:24:20 -0700 (Wed, 22 Jun 2011)
EllapsedTime: 229.0 seconds
RetCode: 0
Status:  OK 
CheckDir: netresponse.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/netresponse.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘netresponse/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘netresponse’ version ‘1.5.09’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘netresponse’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘ICMg.test.R’
  Running ‘test.R’
  Running ‘vdpmixture.R’
  Running ‘visualization.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

netresponse.Rcheck/00install.out:

* installing *source* package ‘netresponse’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c netresponse.c -o netresponse.o
netresponse.c: In function ‘mHPpost’:
netresponse.c:264: warning: unused variable ‘prior_fields’
netresponse.c: In function ‘mLogLambda’:
netresponse.c:655: warning: ‘Mumu’ may be used uninitialized in this function
netresponse.c:656: warning: ‘KsiBeta’ may be used uninitialized in this function
netresponse.c:656: warning: ‘KsiAlpha’ may be used uninitialized in this function
netresponse.c:656: warning: ‘BetaKsi’ may be used uninitialized in this function
netresponse.c:656: warning: ‘AlphaKsi’ may be used uninitialized in this function
netresponse.c:655: warning: ‘Mutilde’ may be used uninitialized in this function
netresponse.c:655: warning: ‘Mubar’ may be used uninitialized in this function
netresponse.c:655: warning: ‘S2mu’ may be used uninitialized in this function
netresponse.c:656: warning: ‘U_p’ may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/netresponse.Rcheck/netresponse/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Attaching package: ‘graph’

The following object(s) are masked from ‘package:igraph’:

    degree

Loading required package: infotheo
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘netresponse.Rnw’ 
** testing if installed package can be loaded

netresponse Copyright (C) 2008-2011 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under GNU GPL >=2, see the licensing terms for details.

* DONE (netresponse)

netresponse.Rcheck/netresponse-Ex.timings:

nameusersystemelapsed
ICMg.combined.sampler92.925 0.49796.481
ICMg.links.sampler6.2970.0806.494
NetResponseModel-class0.0020.0000.002
add.ellipse0.0010.0010.001
detect.responses15.897 0.25316.630
dna0.0550.0030.058
find.similar.features1.0160.0171.041
get.dat0.0000.0000.001
get.model.parameters0.0090.0010.011
get.qofz0.0000.0000.001
get.subnets0.0080.0010.009
list.significant.responses000
mixture.densities0.0000.0010.000
model.stats0.0060.0010.007
netresponse-package8.9110.1309.130
order.responses0.0000.0000.001
osmo0.1040.0050.109
plot.associations0.0010.0000.000
plot.pca000
read.network0.0000.0000.001
response.enrichment0.0000.0000.001
response2sample0.0210.0020.023
sample2response000
toydata0.0050.0010.006
vdp.mixt0.1450.0050.149
write.netresponse.results0.0010.0000.000