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Package 465/516HostnameOS / ArchBUILDCHECKBUILD BIN
snapCGH 1.24.0
John Marioni
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/snapCGH
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  ERROR 

Summary

Package: snapCGH
Version: 1.24.0
Command: rm -rf snapCGH.buildbin-libdir && mkdir snapCGH.buildbin-libdir && E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=snapCGH.buildbin-libdir snapCGH_1.24.0.tar.gz
StartedAt: 2012-01-09 06:42:39 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 06:42:57 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 18.2 seconds
RetCode: 0
Status:  OK  
PackageFile: snapCGH_1.24.0.zip
PackageFileSize: 1.163 MiB

Command output

* installing *source* package 'snapCGH' ...
** libs
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c optimizer.c -o optimizer.o
optimizer.c: In function 'fr_two':
optimizer.c:26:30: warning: unused variable 'temp3'
optimizer.c:26:23: warning: unused variable 'temp2'
optimizer.c:26:10: warning: unused variable 'denom'
optimizer.c: In function 'fr_three':
optimizer.c:195:30: warning: unused variable 'temp3'
optimizer.c:195:23: warning: unused variable 'temp2'
optimizer.c:195:10: warning: unused variable 'denom'
optimizer.c:194:69: warning: unused variable 'alphahat'
optimizer.c: In function 'fr_four':
optimizer.c:413:30: warning: unused variable 'temp3'
optimizer.c:413:23: warning: unused variable 'temp2'
optimizer.c:413:10: warning: unused variable 'denom'
optimizer.c:412:69: warning: unused variable 'alphahat'
optimizer.c: In function 'fr_five':
optimizer.c:687:30: warning: unused variable 'temp3'
optimizer.c:687:23: warning: unused variable 'temp2'
optimizer.c:687:10: warning: unused variable 'denom'
optimizer.c:686:69: warning: unused variable 'alphahat'
optimizer.c:686:38: warning: 'gammaC[0][0]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[0][1]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[0][2]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[0][3]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[0][4]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[1][0]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[1][1]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[1][2]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[1][3]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[1][4]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[2][0]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[2][1]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[2][2]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[2][3]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[2][4]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[3][0]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[3][1]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[3][2]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[3][3]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[3][4]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[4][0]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[4][1]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[4][2]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[4][3]' may be used uninitialized in this function
optimizer.c:686:38: warning: 'gammaC[4][4]' may be used uninitialized in this function
optimizer.c:943:4: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false
optimizer.c: In function 'fr_four':
optimizer.c:412:38: warning: 'gammaC[0][0]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[0][1]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[0][2]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[0][3]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[1][0]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[1][1]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[1][2]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[1][3]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[2][0]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[2][1]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[2][2]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[2][3]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[3][0]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[3][1]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[3][2]' may be used uninitialized in this function
optimizer.c:412:38: warning: 'gammaC[3][3]' may be used uninitialized in this function
optimizer.c:585:1: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false
optimizer.c: In function 'fr_three':
optimizer.c:194:38: warning: 'gammaC[0][0]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[0][1]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[0][2]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[1][0]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[1][1]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[1][2]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[2][0]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[2][1]' may be used uninitialized in this function
optimizer.c:194:38: warning: 'gammaC[2][2]' may be used uninitialized in this function
optimizer.c: In function 'fr_two':
optimizer.c:25:38: warning: 'gammaC[0][0]' may be used uninitialized in this function
optimizer.c:25:38: warning: 'gammaC[0][1]' may be used uninitialized in this function
optimizer.c:25:38: warning: 'gammaC[1][0]' may be used uninitialized in this function
optimizer.c:25:38: warning: 'gammaC[1][1]' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o snapCGH.dll tmp.def optimizer.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/snapCGH.buildbin-libdir/snapCGH/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'snapCGHguide.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'snapCGH' as snapCGH_1.24.0.zip

* DONE (snapCGH)