Package: MAQCsubset

Version: 1.0.22

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MAQCsubset_1.0.22.tar.gz

StartedAt: 2011-07-01 13:02:55 -0700 (Fri, 01 Jul 2011)

EndedAt: 2011-07-01 13:06:30 -0700 (Fri, 01 Jul 2011)

EllapsedTime: 215.3 seconds

RetCode: 0

Status:  OK

CheckDir: MAQCsubset.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.22'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.5Mb
  sub-directories of 1Mb or more:
    data  64.1Mb
    doc    1.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'maqcNotes.pdf' from 285Kb to 151Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: methylumi
Loading required package: nleqslv
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

Attaching package: 'lumi'

The following object(s) are masked from 'package:methylumi':

    estimateM, getHistory

The following object(s) are masked from 'package:affy':

    MAplot, plotDensity

Creating a new generic function for "lines" in "MAQCsubset"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maqcNotes.Rnw' 
** testing if installed package can be loaded

* DONE (MAQCsubset)

name	user	system	elapsed
MAQCsubset	2.213	0.074	2.288
gehMAQCsubDef	0.896	0.027	0.924
gnfCerebHi	0.015	0.001	0.017
proboStruct-class	3.973	0.137	4.117
proboscis	2.556	0.113	2.670