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ind1KG 0.1.8
VJ Carey
Snapshot Date: 2011-07-01 11:15:06 -0700 (Fri, 01 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ind1KG
Last Changed Rev: 1524 / Revision: 1675
Last Changed Date: 2011-04-11 08:44:00 -0700 (Mon, 11 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.7) / i386  OK [ OK ] OK 

Summary

Package: ind1KG
Version: 0.1.8
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.1.8.tar.gz
StartedAt: 2011-07-01 13:01:08 -0700 (Fri, 01 Jul 2011)
EndedAt: 2011-07-01 13:04:47 -0700 (Fri, 01 Jul 2011)
EllapsedTime: 219.0 seconds
RetCode: 0
Status:  OK 
CheckDir: ind1KG.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/ind1KG.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.8'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 182.5Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    doc        2.1Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ind1KG.Rcheck/00install.out:

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ind1KG.Rnw' 
   'nov09rv.Rnw' 
** testing if installed package can be loaded

* DONE (ind1KG)

ind1KG.Rcheck/ind1KG-Ex.timings:

nameusersystemelapsed
c6snp11.709 0.23511.944
gw6c6.snp2400.2110.0060.216
n24028.639 0.64729.297
oregdf0.0060.0010.006
pup240_500k3.0400.1233.165
pup240_disc0.1070.0030.110
rsgdf0.0090.0000.010
yri240_60.7720.0190.792