Package: ppiData

Version: 0.1.14

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ppiData_0.1.14.tar.gz

StartedAt: 2011-07-01 13:04:43 -0700 (Fri, 01 Jul 2011)

EndedAt: 2011-07-01 13:06:08 -0700 (Fri, 01 Jul 2011)

EllapsedTime: 85.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ppiData.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/ppiData.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
               size ASCII compress
  ppipred.rda 896Kb FALSE     none
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.9-data-experiment/meat/ppiData.Rcheck/00check.log'
for details

* installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ppiStats.Rnw' 
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0.003	0.000	0.003
Gavin2002BPGraph	0.002	0.001	0.003
Gavin2006bPGraph	0.002	0.001	0.003
Hazbun2003BPGraph	0.033	0.000	0.034
Ho2002BPGraph	0.002	0.000	0.008
Ito2001BPGraph	0.002	0.001	0.002
ItoCore2001BPGraph	0.002	0.000	0.003
ItoFull2001BPGraph	0.002	0.000	0.003
Krogan2004BPGraph	0.002	0.001	0.003
Krogan2006BPGraph	0.002	0.001	0.003
Tong2002BPGraph	0.003	0.001	0.003
Uetz2000BPGraph1	0.003	0.000	0.003
Uetz2000BPGraph2	0.002	0.000	0.003
Zhao2005BPGraph	0.003	0.001	0.003
bpExperimentNames	0.002	0.006	0.009
collectIntactPPIData	21.990	4.581	26.583
createBPList	0.015	0.001	0.017
intActPPIData	0.005	0.002	0.041
map2Systematic	0.004	0.000	0.004
ppipred	0.003	0.000	0.003
sWAC2Sys	0.002	0.001	0.002
stochasticBaits	0.008	0.001	0.009
tableList	0.002	0.000	0.003
twTableAPMS	0.002	0.000	0.003
twTableY2H	0.003	0.001	0.003
viableProteins	0.016	0.002	0.017
y2h	0.002	0.000	0.002
y2hSysGW	0.014	0.001	0.016