exonfindR 0.99.1
Leonard Goldstein
| Snapshot Date: 2014-10-11 16:20:07 -0700 (Sat, 11 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/exonfindR | | Last Changed Rev: 95116 / Revision: 95345 | | Last Changed Date: 2014-10-07 17:21:41 -0700 (Tue, 07 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### rm -rf exonfindR.buildbin-libdir && mkdir exonfindR.buildbin-libdir && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=exonfindR.buildbin-libdir exonfindR_0.99.1.tar.gz >exonfindR-install.out 2>&1 && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=exonfindR.buildbin-libdir --install="check:exonfindR-install.out" --force-multiarch --no-vignettes --timings exonfindR_0.99.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/exonfindR.Rcheck'
* using R version 3.1.1 Patched (2014-09-24 r66678)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'exonfindR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'exonfindR' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'exonfindR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'GenomicRanges:::extraColumnSlotsAsDF'
See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
'BiocParallel' did not register default BiocParallelParams
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [80s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
analyzeFeatures 33.13 0.10 33.50
predictTxFeatures 14.68 0.07 14.74
getSGFeatureCounts 9.30 0.01 9.32
** running examples for arch 'x64' ... [102s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
analyzeFeatures 37.81 0.24 38.12
predictTxFeatures 20.21 0.08 20.30
getSGFeatureCounts 12.42 0.10 12.51
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
'D:/biocbld/bbs-3.0-bioc/meat/exonfindR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'exonfindR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'exonfindR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'exonfindR' as exonfindR_0.99.1.zip
* DONE (exonfindR)