fastLiquidAssociation 1.1.1
Tina Gunderson
| Snapshot Date: 2014-06-12 16:20:34 -0700 (Thu, 12 Jun 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fastLiquidAssociation | | Last Changed Rev: 91207 / Revision: 91345 | | Last Changed Date: 2014-06-10 15:47:50 -0700 (Tue, 10 Jun 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.2) / x86_64 | NotNeeded | OK | OK | OK |
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###
### Running command:
###
### rm -rf fastLiquidAssociation.buildbin-libdir && mkdir fastLiquidAssociation.buildbin-libdir && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=fastLiquidAssociation.buildbin-libdir fastLiquidAssociation_1.1.1.tar.gz >fastLiquidAssociation-install.out 2>&1 && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=fastLiquidAssociation.buildbin-libdir --install="check:fastLiquidAssociation-install.out" --force-multiarch --no-vignettes --timings fastLiquidAssociation_1.1.1.tar.gz && mv fastLiquidAssociation.buildbin-libdir/* fastLiquidAssociation.Rcheck/ && rmdir fastLiquidAssociation.buildbin-libdir
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* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/fastLiquidAssociation.Rcheck'
* using R version 3.1.0 Patched (2014-06-10 r65909)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fastLiquidAssociation/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fastLiquidAssociation' version '1.1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fastLiquidAssociation' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [72s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fastLiquidAssociation-package 2.67 0.03 31.51
fastboots.GLA-methods 0.92 0.05 30.09
** running examples for arch 'x64' ... [72s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fastLiquidAssociation-package 2.27 0.01 32.81
fastboots.GLA-methods 1.01 0.03 31.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
install for i386
* installing *source* package 'fastLiquidAssociation' ...
** R
** data
** inst
** preparing package for lazy loading
==========================================================================
*
* Package WGCNA 1.34 loaded.
*
* Important note: It appears that your system supports multi-threading,
* but it is not enabled within WGCNA in R.
* To allow multi-threading within WGCNA with all available cores, use
*
* allowWGCNAThreads()
*
* within R. Use disableWGCNAThreads() to disable threading if necessary.
* Alternatively, set the following environment variable on your system:
*
* ALLOW_WGCNA_THREADS=<number_of_processors>
*
* for example
*
* ALLOW_WGCNA_THREADS=16
*
* To set the environment variable in linux bash shell, type
*
* export ALLOW_WGCNA_THREADS=16
*
* before running R. Other operating systems or shells will
* have a similar command to achieve the same aim.
*
==========================================================================
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
==========================================================================
*
* Package WGCNA 1.34 loaded.
*
* Important note: It appears that your system supports multi-threading,
* but it is not enabled within WGCNA in R.
* To allow multi-threading within WGCNA with all available cores, use
*
* allowWGCNAThreads()
*
* within R. Use disableWGCNAThreads() to disable threading if necessary.
* Alternatively, set the following environment variable on your system:
*
* ALLOW_WGCNA_THREADS=<number_of_processors>
*
* for example
*
* ALLOW_WGCNA_THREADS=16
*
* To set the environment variable in linux bash shell, type
*
* export ALLOW_WGCNA_THREADS=16
*
* before running R. Other operating systems or shells will
* have a similar command to achieve the same aim.
*
==========================================================================
install for x64
* installing *source* package 'fastLiquidAssociation' ...
** testing if installed package can be loaded
==========================================================================
*
* Package WGCNA 1.34 loaded.
*
* Important note: It appears that your system supports multi-threading,
* but it is not enabled within WGCNA in R.
* To allow multi-threading within WGCNA with all available cores, use
*
* allowWGCNAThreads()
*
* within R. Use disableWGCNAThreads() to disable threading if necessary.
* Alternatively, set the following environment variable on your system:
*
* ALLOW_WGCNA_THREADS=<number_of_processors>
*
* for example
*
* ALLOW_WGCNA_THREADS=16
*
* To set the environment variable in linux bash shell, type
*
* export ALLOW_WGCNA_THREADS=16
*
* before running R. Other operating systems or shells will
* have a similar command to achieve the same aim.
*
==========================================================================
* MD5 sums
packaged installation of 'fastLiquidAssociation' as fastLiquidAssociation_1.1.1.zip
* DONE (fastLiquidAssociation)