flowWorkspace 3.12.06 Greg Finak ,Mike Jiang
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/flowWorkspace | Last Changed Rev: 100927 / Revision: 102249 | Last Changed Date: 2015-03-20 10:30:59 -0700 (Fri, 20 Mar 2015) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/flowWorkspace_3.12.06.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch flowWorkspace_3.12.06.tar.gz && rm flowWorkspace_3.12.06.tar.gz
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 5527k 100 5527k 0 0 84.2M 0 --:--:-- --:--:-- --:--:-- 91.4M
install for i386
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'flowWorkspace' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GatingHierarchy.cpp -o GatingHierarchy.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GatingSet.cpp -o GatingSet.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c POPINDICES.cpp -o POPINDICES.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c calibrationTable.cpp -o calibrationTable.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c flowData.cpp -o flowData.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c gate.cpp -o gate.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c global.cpp -o global.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c nodeProperties.cpp -o nodeProperties.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c spline.cpp -o spline.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c transformation.cpp -o transformation.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
winFlowJoWorkspace.cpp:488:27: warning: "/*" within comment [-Wcomment]
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c workspace.cpp -o workspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//i386/include/libxml2 -Ic:/boost//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c wsNode.cpp -o wsNode.o
g++ -m32 -shared -s -static-libgcc -o flowWorkspace.dll tmp.def GatingHierarchy.o GatingSet.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o -L/usr/lib/x86_64-linux-gnu -Lc:/libxml2//i386/lib c:/libxml2//i386/lib/libxml2.a c:/boost//i386/lib/libboost_serialization-mgw46-mt-1_52.a c:/boost//i386/lib/libboost_regex-mgw46-mt-1_52.a -lws2_32 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/flowWorkspace/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'flowWorkspace' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GatingHierarchy.cpp -o GatingHierarchy.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GatingSet.cpp -o GatingSet.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c POPINDICES.cpp -o POPINDICES.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c calibrationTable.cpp -o calibrationTable.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c flowData.cpp -o flowData.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c gate.cpp -o gate.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c global.cpp -o global.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c nodeProperties.cpp -o nodeProperties.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c spline.cpp -o spline.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c transformation.cpp -o transformation.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
winFlowJoWorkspace.cpp:488:27: warning: "/*" within comment [-Wcomment]
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c workspace.cpp -o workspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DROUT -Wno-deprecated -Ic:/libxml2//x64/include/libxml2 -Ic:/boost//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c wsNode.cpp -o wsNode.o
g++ -m64 -shared -s -static-libgcc -o flowWorkspace.dll tmp.def GatingHierarchy.o GatingSet.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o -L/usr/lib/x86_64-linux-gnu -Lc:/libxml2//x64/lib c:/libxml2//x64/lib/libxml2.a c:/boost//x64/lib/libboost_serialization-mgw46-mt-1_52.a c:/boost//x64/lib/libboost_regex-mgw46-mt-1_52.a -lws2_32 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/flowWorkspace/libs/x64
** testing if installed package can be loaded
* DONE (flowWorkspace)