msQC 0.99.7
Bo Wen
| Snapshot Date: 2014-07-30 16:20:07 -0700 (Wed, 30 Jul 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msQC | | Last Changed Rev: 90682 / Revision: 93061 | | Last Changed Date: 2014-05-23 13:38:17 -0700 (Fri, 23 May 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.2) / x86_64 | NotNeeded | OK | OK | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf msQC.buildbin-libdir && mkdir msQC.buildbin-libdir && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=msQC.buildbin-libdir msQC_0.99.7.tar.gz >msQC-install.out 2>&1 && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=msQC.buildbin-libdir --install="check:msQC-install.out" --force-multiarch --no-vignettes --timings msQC_0.99.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/msQC.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'msQC' version '0.99.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'msQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addSummaryChart: no visible binding for global variable 'peplength'
addSummaryChart: no visible binding for global variable '..count..'
addSummaryChart: no visible binding for global variable 'delta'
msQC.barplot: no visible binding for global variable 'x'
msQC.barplot: no visible binding for global variable 'y'
msQC.barplot: no visible binding for global variable 'label'
plotMS1Error: no visible binding for '<<-' assignment to 'curenv'
plotMS1Error: no visible binding for global variable 'bioRep'
plotMS1Error: no visible binding for global variable 'techRep'
plotMS1Error: no visible binding for global variable 'fraction'
plotMS1Error: no visible binding for global variable 'peptide_summary'
plotMS1Error: no visible binding for global variable 'curenv'
plotMS1Error : <anonymous>: no visible binding for global variable
'curenv'
plotMS2Error: no visible binding for global variable 'bioRep'
plotMS2Error: no visible binding for global variable 'techRep'
plotMS2Error: no visible binding for global variable 'fraction'
plotMS2Error: no visible binding for global variable 'peptide_summary'
plotSampleIDResultErrorBar: no visible binding for global variable
'fraction'
plotSampleIDResultErrorBar: no visible binding for global variable
'val'
plotSampleIDResultErrorBar: no visible binding for global variable 'se'
qcHist: no visible binding for global variable 'error'
qcHist: no visible binding for global variable 'techRep'
qcHist: no visible binding for global variable 'bioRep'
qcHist: no visible global function definition for 'labs'
qcHist2: no visible binding for global variable 'error'
qcHist2: no visible binding for global variable 'fractile'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [3s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [2s]
[2s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [3s]
[3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'D:/biocbld/bbs-3.0-bioc/meat/msQC.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'msQC' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'msQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msQC' as msQC_0.99.7.zip
* DONE (msQC)