snapCGH 1.36.0
John Marioni
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/snapCGH | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | [ OK ] | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD INSTALL snapCGH
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* installing to library ‘/home/biocbuild/bbs-3.0-bioc/R/library’
* installing *source* package ‘snapCGH’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c optimizer.c -o optimizer.o
optimizer.c: In function ‘fr_two’:
optimizer.c:26:30: warning: unused variable ‘temp3’ [-Wunused-variable]
optimizer.c:26:23: warning: unused variable ‘temp2’ [-Wunused-variable]
optimizer.c:26:10: warning: unused variable ‘denom’ [-Wunused-variable]
optimizer.c: In function ‘fr_three’:
optimizer.c:195:30: warning: unused variable ‘temp3’ [-Wunused-variable]
optimizer.c:195:23: warning: unused variable ‘temp2’ [-Wunused-variable]
optimizer.c:195:10: warning: unused variable ‘denom’ [-Wunused-variable]
optimizer.c:194:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
optimizer.c: In function ‘fr_four’:
optimizer.c:413:30: warning: unused variable ‘temp3’ [-Wunused-variable]
optimizer.c:413:23: warning: unused variable ‘temp2’ [-Wunused-variable]
optimizer.c:413:10: warning: unused variable ‘denom’ [-Wunused-variable]
optimizer.c:412:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
optimizer.c: In function ‘fr_five’:
optimizer.c:687:30: warning: unused variable ‘temp3’ [-Wunused-variable]
optimizer.c:687:23: warning: unused variable ‘temp2’ [-Wunused-variable]
optimizer.c:687:10: warning: unused variable ‘denom’ [-Wunused-variable]
optimizer.c:686:69: warning: unused variable ‘alphahat’ [-Wunused-variable]
optimizer.c:943:4: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow]
optimizer.c: In function ‘fr_four’:
optimizer.c:585:1: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow]
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.0-bioc/R/lib -L/usr/local/lib -o snapCGH.so optimizer.o -L/home/biocbuild/bbs-3.0-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.0-bioc/R/library/snapCGH/libs
** R
** data
** inst
** preparing package for lazy loading
Warning in namespaceImportMethods(ns, loadNamespace(j <- imp[[1L]], c(lib.loc, :
No generic function found corresponding to requested imported methods for "as.list" from package "multtest" (malformed exports?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in namespaceImportMethods(ns, loadNamespace(j <- imp[[1L]], c(lib.loc, :
No generic function found corresponding to requested imported methods for "as.list" from package "multtest" (malformed exports?)
* DONE (snapCGH)