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INSTALL report for rsbml on machv2

This page was generated on 2020-04-29 15:30:27 -0400 (Wed, 29 Apr 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE rsbml PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1539/1904HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rsbml 2.46.0
Michael Lawrence
Snapshot Date: 2020-04-28 17:42:04 -0400 (Tue, 28 Apr 2020)
URL: https://git.bioconductor.org/packages/rsbml
Branch: RELEASE_3_11
Last Commit: 44aa5a3
Last Changed Date: 2020-04-27 14:15:54 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64 [ ERROR ] ERROR  skipped  skipped 

Summary

Package: rsbml
Version: 2.46.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rsbml
StartedAt: 2020-04-28 19:24:06 -0400 (Tue, 28 Apr 2020)
EndedAt: 2020-04-28 19:24:38 -0400 (Tue, 28 Apr 2020)
EllapsedTime: 31.8 seconds
RetCode: 1
Status:  ERROR 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rsbml
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘rsbml’ ...
** using staged installation
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML... yes
configure: === Begin local SOSLib build ===
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking build system type... i386-apple-darwin18.7.0
checking host system type... i386-apple-darwin18.7.0
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking whether gcc accepts -fpic... yes
checking how to run the C preprocessor... gcc -E
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for autoconf... /usr/local/bin/autoconf
checking for aclocal... /usr/local/bin/aclocal
checking for make... /usr/bin/make
checking for ar... /usr/bin/ar
checking for swig... /usr/local/bin/swig
checking for perl... /usr/bin/perl
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for SBML... yes
checking for correct functioning of SBML... no:
                   CFLAGS=-g -O2 -pg -Wno-unknown-pragmas -Wall -ansi -std=iso9899:1990 -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include  
                   LDFLAGS=  
                   LIBS=-lm -lstdc++ -L/usr/local/lib -lsbml  
configure: error: Can not link to SBML Library:
		  Please, make sure to use libSBML version >= 3.0.2 or CVS
configure: === End local SOSLib build ===
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c StringMap.c -o StringMap.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c check.c -o check.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c doc.c -o doc.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c dom.c -o dom.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c graph.c -o graph.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c io.c -o io.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c layoutWrappers.cpp -o layoutWrappers.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c mathml.c -o mathml.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include      -I/usr/local/include   -fPIC  -Wall -g -O2  -c simulate.c -o simulate.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -L/usr/local/lib -lsbml -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: object file (/usr/local/lib/libsbml.a(CVTerm.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CompartmentType.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Compartment.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Constraint.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Date.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Delay.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(EventAssignment.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Event.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinition.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(InitialAssignment.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(KineticLaw.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(List.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ModelCreator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ModelHistory.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Model.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Parameter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Reaction.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Rule.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLDocument.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLReader.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLWriter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesType.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Species.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(StoichiometryMath.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Trigger.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UnitDefinition.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UnitKind.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Unit.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLAttributes.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLError.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLNode.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(util.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLTypeCodes.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CompressCommon.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLErrorLog.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(MetaIdFilter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLErrorLog.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(AlgebraicRule.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SyntaxChecker.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentRule.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLInputStream.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLOutputStream.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CallbackRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FormulaUnitsData.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(OutputCompressor.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RDFAnnotationParser.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBaseExtensionPoint.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ConversionProperties.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UnitFormulaFormatter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConverterRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtensionRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInternalValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SimpleSpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ModifierSpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConstructorException.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UnitConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(StrictUnitConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBO.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(IdList.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ListOf.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(IdFilter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Priority.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RateRule.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLToken.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLError.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(Validator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLTriple.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBasePlugin.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtension.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtensionException.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ISBMLExtensionNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(memory.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(bzfstream.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(zfstream.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLVisitor.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(VConstraint.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(zipfstream.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLTokenizer.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ElementFilter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLTransforms.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(PowerUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLIdConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ConversionOption.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLRuleConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ExponentUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLUnitsConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ArgumentsUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLRateOfConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(KineticLawUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLReactionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(OverdeterminedValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInferUnitsConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBOConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ModelingPracticeValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLevelVersionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLStripPackageConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L2v1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L2v2CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L2v3CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L2v4CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L3v1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(L3v2CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(MathMLConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ArgumentsUnitsCheckWarnings.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLevel1Version1Converter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLocalParameterConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(InternalConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(IdentifierConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInitialAssignmentConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLFunctionDefinitionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLParser.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ASTBasePlugin.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBasePluginCreatorBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(libsbml-version.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(MathFilter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLHandler.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLParser.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCycles.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueMetaId.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConverter.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(KineticLawVars.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LambdaMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentCycles.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(IdNameNewOnSBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsInModel.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ReportEmptyListOf.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInRules.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ValidCnUnitsValue.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CiElementMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CiElementNot0DComp.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ModelUnitsDangling.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(NumberArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(OverDeterminedCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LogicalArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(NumericArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(EqualityArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(PieceBooleanMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesReactionOrRule.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(StoichiometryMathVars.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsInKineticLaw.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentRuleOrdering.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionApplyMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinitionVars.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(NumericReturnMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionNoArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameterMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(PiecewiseValueMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCiTargetMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(CompartmentOutsideCycles.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionReferredToExists.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RateOfAssignmentMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCompartmentMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInEventsAndRules.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(DuplicateTopLevelAnnotation.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinitionRecursion.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsForUnitDefinitions.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInEventAssignments.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameterShadowsIdInModel.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueSpeciesTypesInCompartment.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueSymbolsInInitialAssignments.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInInitialAssignmentsAndRules.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConvert.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UnitsBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(unzip.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(zip.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(MathMLBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLHandler.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLFileBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLMemoryBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(IdBase.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(ioapi.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLTranscode.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLAttributes.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(InputDecompressor.o)) was built for newer OSX version (10.14) than being linked (10.13)
ld: warning: object file (/usr/local/lib/libsbml.a(XMLBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13)
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘type’ in package ‘rsbml’
Creating a new generic function for ‘type<-’ in package ‘rsbml’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘rsbml’:
 .onLoad failed in loadNamespace() for 'rsbml', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so, 6): Symbol not found: _ASTNode_isAvogadro
  Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so
  Expected in: flat namespace
 in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rsbml’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rsbml’