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### Running command:
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###   chmod a+r pcaMethods -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data pcaMethods
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* checking for file 'pcaMethods/DESCRIPTION' ... OK
* preparing 'pcaMethods':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'missingValues.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'pcaMethods'

The following object is masked from 'package:stats':

    loadings

--- finished re-building 'missingValues.Rnw'

--- re-building 'outliers.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "outliers.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'outliers.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'outliers.pdf' for vignette with name 'outliers' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp4otK3M\Rbuild15f85ff1592f\pcaMethods\vignettes': 'missingValues.R' (1776 bytes), 'missingValues.Rnw' (2988 bytes), 'missingValues.aux' (783 bytes), 'missingValues.log' (23851 bytes), 'missingValues.out' (59 bytes), 'missingValues.pdf' (126744 bytes), 'missingValues.tex' (3600 bytes), 'outliers-005.pdf' (16988 bytes), 'outliers.Rnw' (5145 bytes), 'outliers.tex' (4931 bytes), 'pcaMethods.Rnw' (23394 bytes)
--- failed re-building 'outliers.Rnw'

--- re-building 'pcaMethods.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "pcaMethods.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'pcaMethods.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'pcaMethods.pdf' for vignette with name 'pcaMethods' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp4otK3M\Rbuild15f85ff1592f\pcaMethods\vignettes': 'missingValues.R' (1776 bytes), 'missingValues.Rnw' (2988 bytes), 'missingValues.aux' (783 bytes), 'missingValues.log' (23851 bytes), 'missingValues.out' (59 bytes), 'missingValues.pdf' (126744 bytes), 'missingValues.tex' (3600 bytes), 'outliers-005.pdf' (16988 bytes), 'outliers.R' (1844 bytes), 'outliers.Rnw' (5145 bytes), 'outliers.tex' (4931 bytes), 'pcaMethods-002.pdf' (10337 bytes), 'pcaMethods-007.pdf' (4646 bytes), 'pcaMethods-008.pdf' (10815 bytes), 'pcaMethods-011.pdf' (4635 bytes), 'pcaMethods-013.pdf' (4166 bytes), 'pcaMethods-014.pdf' (4587 bytes), 'pcaMethods-015.pdf' (9074 bytes), 'pcaMethods-016.pdf' (35747 bytes), 'pcaMethods-017.pdf' (14657 bytes), 'pcaMethods.Rnw' (23394 bytes), 'pcaMethods.tex' (21656 bytes)
--- failed re-building 'pcaMethods.Rnw'

SUMMARY: processing the following files failed:
  'outliers.Rnw' 'pcaMethods.Rnw'

Error: Vignette re-building failed.
Execution halted